RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 CACNA1EQ15878 2313 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 AGPAT2O15120 278 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 MBTPS2O43462 519 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 FARS2O95363 451 aaKnown RBP8.63□□□□□ -1.03
SS18-203ENST00000415083 FCGR3AP08637 254 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 FAHP16930 419 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 ZNF20P17024 532 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 ALDH3B1P43353 468 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 RBM39Q14498 530 aaKnown RBP8.63□□□□□ -1.03
SS18-203ENST00000415083 RAB30Q15771 203 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 C6orf201Q7Z4U5 140 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 UEVLDQ8IX04 471 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 ADPRHL1Q8NDY3 354 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 CADM4Q8NFZ8 388 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 OR10H5Q8NGA6 315 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 MARS2Q96GW9 593 aaKnown RBP8.63□□□□□ -1.03
SS18-203ENST00000415083 UQCC1Q9NVA1 299 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 KLRF1Q9NZS2 232 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 LPAR3Q9UBY5 353 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 ZNF629Q9UEG4 869 aaPredicted RBP8.63□□□□□ -1.03
SS18-203ENST00000415083 AMDHD2Q9Y303 409 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 A0A1B0GW55 424 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 DUX4L2P0CJ85 424 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 DUX4L3P0CJ86 424 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 DUX4L4P0CJ87 422 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 DUX4L5P0CJ88 424 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 DUX4L6P0CJ89 424 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 DUX4L7P0CJ90 424 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 ACKR3P25106 362 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 CTSSP25774 331 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 AKR1C3P42330 323 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 PTGFRP43088 359 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 ARL4DP49703 201 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 BTNL8Q6UX41 500 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 SLC16A14Q7RTX9 510 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 C5orf24Q7Z6I8 188 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 CARFQ8N187 725 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 ARRDC1Q8N5I2 433 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 SLC39A7Q92504 469 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 UCN2Q96RP3 112 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 RASL10BQ96S79 203 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 PPP4R1LQ9P1A2 415 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 RCC2Q9P258 522 aaKnown RBP8.63□□□□□ -1.03
SS18-203ENST00000415083 DUX4Q9UBX2 424 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 LOC400499M0QZD8 3231 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 PI4KAP42356 2102 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 AQP7P3A6NL99 342 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 IGHG1P01857 330 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 HEXBP07686 556 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 CBR1P16152 277 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 SNU13P55769 128 aaKnown RBP8.63□□□□□ -1.03
SS18-203ENST00000415083 HIST1H3AP68431 136 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 CTAG1AP78358 180 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 HIST2H3PS2Q5TEC6 136 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 H3F3CQ6NXT2 135 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 HIST2H3AQ71DI3 136 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.63□□□□□ -1.03
SS18-203ENST00000415083 KCNG3Q8TAE7 436 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 DYRK2Q92630 601 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 OR6C1Q96RD1 312 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 NRIP2Q9BQI9 281 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 MMP26Q9NRE1 261 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 COA4Q9NYJ1 87 aa8.63□□□□□ -1.03
SS18-203ENST00000415083 STMND1H3BQB6 276 aa8.62□□□□□ -1.03
SS18-203ENST00000415083 LRP3O75074 770 aa8.62□□□□□ -1.03
SS18-203ENST00000415083 IFNA6P05013 189 aa8.62□□□□□ -1.03
SS18-203ENST00000415083 CD5P06127 495 aa8.62□□□□□ -1.03
SS18-203ENST00000415083 HOXB5P09067 269 aa8.62□□□□□ -1.03
SS18-203ENST00000415083 SPP1P10451 314 aa8.62□□□□□ -1.03
SS18-203ENST00000415083 TPT1P13693 172 aaKnown RBP8.62□□□□□ -1.03
SS18-203ENST00000415083 PNLIPP16233 465 aa8.62□□□□□ -1.03
SS18-203ENST00000415083 OTX1P32242 354 aaPredicted RBP8.62□□□□□ -1.03
SS18-203ENST00000415083 TMEM176BQ3YBM2 270 aaPredicted RBP8.62□□□□□ -1.03
SS18-203ENST00000415083 PRAMEF20Q5VT98 475 aa8.62□□□□□ -1.03
SS18-203ENST00000415083 GUSBP11Q6P575 273 aa8.62□□□□□ -1.03
SS18-203ENST00000415083 Q7L0L9 218 aa8.62□□□□□ -1.03
SS18-203ENST00000415083 ZIC4Q8N9L1 334 aa8.62□□□□□ -1.03
SS18-203ENST00000415083 ERGIC1Q969X5 290 aa8.62□□□□□ -1.03
SS18-203ENST00000415083 FBXO17Q96EF6 278 aa8.62□□□□□ -1.03
SS18-203ENST00000415083 TM2D1Q9BX74 207 aa8.62□□□□□ -1.03
SS18-203ENST00000415083 HRH4Q9H3N8 390 aa8.62□□□□□ -1.03
SS18-203ENST00000415083 WFDC1Q9HC57 220 aa8.62□□□□□ -1.03
SS18-203ENST00000415083 PCDHGA1Q9Y5H4 931 aa8.62□□□□□ -1.03
SS18-203ENST00000415083 SHANK1Q9Y566 2161 aa8.62□□□□□ -1.03
SS18-203ENST00000415083 HCKP08631 526 aa8.62□□□□□ -1.03
SS18-203ENST00000415083 SRFP11831 508 aa8.62□□□□□ -1.03
SS18-203ENST00000415083 ZNF43P17038 809 aa8.62□□□□□ -1.03
SS18-203ENST00000415083 NOVA1P51513 510 aaKnown RBP8.62□□□□□ -1.03
SS18-203ENST00000415083 RRADP55042 308 aa8.62□□□□□ -1.03
SS18-203ENST00000415083 FOXL2NBQ6ZUU3 175 aa8.62□□□□□ -1.03
SS18-203ENST00000415083 OR10A2Q9H208 303 aa8.62□□□□□ -1.03
SS18-203ENST00000415083 MOB1AQ9H8S9 216 aa8.62□□□□□ -1.03
SS18-203ENST00000415083 DECR2Q9NUI1 292 aa8.62□□□□□ -1.03
SS18-203ENST00000415083 COLCA2A8K830 154 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 MTRF1O75570 445 aaKnown RBP8.61□□□□□ -1.03
SS18-203ENST00000415083 LMO1P25800 156 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 PJVKQ0ZLH3 352 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 ZNF585AQ6P3V2 769 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 CPEB2Q7Z5Q1 589 aaKnown RBP8.61□□□□□ -1.03
SS18-203ENST00000415083 FOXRED2Q8IWF2 684 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms