RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 OR8B8Q15620 311 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 SMAD2Q15796 467 aaKnown RBP5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 RPL7L1Q6DKI1 246 aaKnown RBP5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 DBX2Q6ZNG2 339 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 Q6ZS49 121 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 TMPPEQ6ZT21 453 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 COX15Q7KZN9 410 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 SGPP2Q8IWX5 399 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 ZNF101Q8IZC7 436 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 OR13C9Q8NGT0 318 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 OR2AJ1Q8NGZ0 328 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 HAS2Q92819 552 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 TCEAL3Q969E4 200 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 ARHGAP5-AS1Q96IT6 56 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 OXGR1Q96P68 337 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 OR11A1Q9GZK7 315 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 CHST5Q9GZS9 411 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 C11orf1Q9H5F2 150 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 ZNF768Q9H5H4 540 aaKnown RBP5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 METTL8Q9H825 291 aaKnown RBP5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 SDHAF3Q9NRP4 125 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 IL36GQ9NZH8 169 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 PLA2G2EQ9NZK7 142 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 BORCS7-ASMTA0A0B4J1R7 106 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 IGKV1-9A0A0C4DH69 117 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 A0A1B0GX78 115 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 DUXBA0A1W2PPF3 345 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 B4DGG1 531 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 LMO7DNF2Z398 122 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 TERTO14746 1132 aaKnown RBP5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 GPR137BO60478 399 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 ADAP1O75689 374 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 DHRS3O75911 302 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 IFNA21P01568 189 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 LIPCP11150 499 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 MMP9P14780 707 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 MYOGP15173 224 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 KCNJ3P48549 501 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 ARHGDIBP52566 201 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 ODF1Q14990 250 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 EIF2S3LQ2VIR3 472 aaKnown RBP5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 PLPPR5Q32ZL2 321 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 C14orf28Q4W4Y0 310 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 LINC00346Q8IVM7 164 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 WDFY1Q8IWB7 410 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 SULF2Q8IWU5 870 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 UEVLDQ8IX04 471 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 OR2I1PQ8NGU4 316 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 FNDC9Q8TBE3 224 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 OR51E1Q8TCB6 317 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 SPSB1Q96BD6 273 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 TMEM41AQ96HV5 264 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 C18orf12Q96KH6 178 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 GAL3ST4Q96RP7 486 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 CMSS1Q9BQ75 279 aaKnown RBP5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 PBDC1Q9BVG4 233 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 FOXQ1Q9C009 403 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 VN1R1Q9GZP7 353 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 UNKLQ9H9P5 680 aaKnown RBP5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 CENPMQ9NSP4 180 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 ZNF391Q9UJN7 358 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 FAM96BQ9Y3D0 163 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 HDGFL3Q9Y3E1 203 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 TMED3Q9Y3Q3 217 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 PIGBOS1A0A0B4J2F0 54 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 CXorf65A6NEN9 183 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 OR2W5A6NFC9 320 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 UMAD1C9J7I0 102 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 EIF1BO60739 113 aaKnown RBP5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 MPIG6BO95866 241 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 HPNP05981 417 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 S100A9P06702 114 aaKnown RBP5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 WNT2P09544 360 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 FCGR2CP31995 323 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 EIF1P41567 113 aaKnown RBP5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 OR3A4PP47883 348 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 NPY4RP50391 375 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 AKR1C2P52895 323 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 BIDP55957 195 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 TMEM33P57088 247 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 SRPXP78539 464 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 AKR1C1Q04828 323 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 HYAL1Q12794 435 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 KISS1Q15726 138 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 NSDHLQ15738 373 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 DPPA3Q6W0C5 159 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 Q6ZRG5 221 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 ZNF761Q86XN6 746 aaPredicted RBP5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 ZNF100Q8IYN0 542 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 PRR22Q8IZ63 422 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 APCDD1LQ8NCL9 501 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 OR10G4Q8NGN3 311 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 OR51F2Q8NH61 342 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 STT3BQ8TCJ2 826 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 HPSE2Q8WWQ2 592 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 NKD1Q969G9 470 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 TMEM54Q969K7 222 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 INTS12Q96CB8 462 aaKnown RBP5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 Q96M66 194 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 ADAT1Q9BUB4 502 aaKnown RBP5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms