RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 SPACA5Q96QH8 159 aa15.39■□□□□ 0.05
SDC1-203ENST00000403076 GPER1Q99527 375 aa15.39■□□□□ 0.05
SDC1-203ENST00000403076 MS4A5Q9H3V2 200 aa15.39■□□□□ 0.05
SDC1-203ENST00000403076 TENM4Q6N022 2769 aa15.39■□□□□ 0.05
SDC1-203ENST00000403076 OR5B21A6NL26 309 aa15.38■□□□□ 0.05
SDC1-203ENST00000403076 ZNF732B4DXR9 585 aa15.38■□□□□ 0.05
SDC1-203ENST00000403076 MLNRO43193 412 aa15.38■□□□□ 0.05
SDC1-203ENST00000403076 IL1AP01583 271 aa15.38■□□□□ 0.05
SDC1-203ENST00000403076 ADRA2CP18825 462 aa15.38■□□□□ 0.05
SDC1-203ENST00000403076 TNFSF4P23510 183 aa15.38■□□□□ 0.05
SDC1-203ENST00000403076 RPS19P39019 145 aaKnown RBP15.38■□□□□ 0.05
SDC1-203ENST00000403076 RBP2P50120 134 aa15.38■□□□□ 0.05
SDC1-203ENST00000403076 PSMD7P51665 324 aa15.38■□□□□ 0.05
SDC1-203ENST00000403076 MTCP1P56278 107 aa15.38■□□□□ 0.05
SDC1-203ENST00000403076 MZT1Q08AG7 82 aa15.38■□□□□ 0.05
SDC1-203ENST00000403076 SWI5Q1ZZU3 235 aa15.38■□□□□ 0.05
SDC1-203ENST00000403076 LHFPL2Q6ZUX7 228 aa15.38■□□□□ 0.05
SDC1-203ENST00000403076 NKAIN3Q8N8D7 197 aa15.38■□□□□ 0.05
SDC1-203ENST00000403076 DNAAF1Q8NEP3 725 aa15.38■□□□□ 0.05
SDC1-203ENST00000403076 HPSE2Q8WWQ2 592 aa15.38■□□□□ 0.05
SDC1-203ENST00000403076 CXXC4Q9H2H0 198 aa15.38■□□□□ 0.05
SDC1-203ENST00000403076 C14orf119Q9NWQ9 140 aa15.38■□□□□ 0.05
SDC1-203ENST00000403076 ZDHHC8Q9ULC8 765 aa15.38■□□□□ 0.05
SDC1-203ENST00000403076 PMF1-BGLAPU3KQ54 211 aa15.38■□□□□ 0.05
SDC1-203ENST00000403076 FASNP49327 2511 aaKnown RBP15.38■□□□□ 0.05
SDC1-203ENST00000403076 F5H5P2 479 aa15.38■□□□□ 0.05
SDC1-203ENST00000403076 TPD52L2O43399 206 aaKnown RBP15.38■□□□□ 0.05
SDC1-203ENST00000403076 NCR1O76036 304 aa15.38■□□□□ 0.05
SDC1-203ENST00000403076 ALDOBP05062 364 aa15.38■□□□□ 0.05
SDC1-203ENST00000403076 BMP4P12644 408 aa15.38■□□□□ 0.05
SDC1-203ENST00000403076 PRF1P14222 555 aa15.38■□□□□ 0.05
SDC1-203ENST00000403076 GNG3P63215 75 aa15.38■□□□□ 0.05
SDC1-203ENST00000403076 ZNF295-AS1Q8N0V1 137 aa15.38■□□□□ 0.05
SDC1-203ENST00000403076 CPNE2Q96FN4 548 aaPredicted RBP15.38■□□□□ 0.05
SDC1-203ENST00000403076 DIRC2Q96SL1 478 aa15.38■□□□□ 0.05
SDC1-203ENST00000403076 PLGRKTQ9HBL7 147 aa15.38■□□□□ 0.05
SDC1-203ENST00000403076 FBXO9Q9UK97 447 aaPredicted RBP15.38■□□□□ 0.05
SDC1-203ENST00000403076 LAMP3Q9UQV4 416 aa15.38■□□□□ 0.05
SDC1-203ENST00000403076 V9GY05 133 aa15.38■□□□□ 0.05
SDC1-203ENST00000403076 C17orf100A8MU93 164 aa15.37■□□□□ 0.05
SDC1-203ENST00000403076 SOD3P08294 240 aa15.37■□□□□ 0.05
SDC1-203ENST00000403076 DANCRP0C864 163 aa15.37■□□□□ 0.05
SDC1-203ENST00000403076 ZNF93P35789 620 aaPredicted RBP15.37■□□□□ 0.05
SDC1-203ENST00000403076 CAV3P56539 151 aa15.37■□□□□ 0.05
SDC1-203ENST00000403076 OR10A3P58181 314 aa15.37■□□□□ 0.05
SDC1-203ENST00000403076 TNFAIP6P98066 277 aaPredicted RBP15.37■□□□□ 0.05
SDC1-203ENST00000403076 KISS1Q15726 138 aa15.37■□□□□ 0.05
SDC1-203ENST00000403076 ZCCHC24Q8N2G6 241 aaKnown RBP15.37■□□□□ 0.05
SDC1-203ENST00000403076 RFT1Q96AA3 541 aa15.37■□□□□ 0.05
SDC1-203ENST00000403076 FOXRED1Q96CU9 486 aaPredicted RBP15.37■□□□□ 0.05
SDC1-203ENST00000403076 C14orf79Q96F83 325 aa15.37■□□□□ 0.05
SDC1-203ENST00000403076 NKX3-1Q99801 234 aaPredicted RBP15.37■□□□□ 0.05
SDC1-203ENST00000403076 VRK1Q99986 396 aaPredicted RBP15.37■□□□□ 0.05
SDC1-203ENST00000403076 IGHV3-64DA0A0J9YX35 117 aa15.36■□□□□ 0.05
SDC1-203ENST00000403076 PQLC2LA1A4F0 135 aa15.36■□□□□ 0.05
SDC1-203ENST00000403076 IGHV1-46P01743 117 aa15.36■□□□□ 0.05
SDC1-203ENST00000403076 GRPP07492 148 aa15.36■□□□□ 0.05
SDC1-203ENST00000403076 THBS2P35442 1172 aa15.36■□□□□ 0.05
SDC1-203ENST00000403076 SRP9P49458 86 aaKnown RBP15.36■□□□□ 0.05
SDC1-203ENST00000403076 DTX2Q86UW9 622 aa15.36■□□□□ 0.05
SDC1-203ENST00000403076 PNLDC1Q8NA58 520 aaKnown RBP15.36■□□□□ 0.05
SDC1-203ENST00000403076 MARVELD3Q96A59 401 aa15.36■□□□□ 0.05
SDC1-203ENST00000403076 TRAF4Q9BUZ4 470 aaPredicted RBP15.36■□□□□ 0.05
SDC1-203ENST00000403076 FGF23Q9GZV9 251 aaPredicted RBP15.36■□□□□ 0.05
SDC1-203ENST00000403076 PLEKHF2Q9H8W4 249 aa15.36■□□□□ 0.05
SDC1-203ENST00000403076 DECR2Q9NUI1 292 aa15.36■□□□□ 0.05
SDC1-203ENST00000403076 A0A1B0GWJ7 208 aa15.35■□□□□ 0.05
SDC1-203ENST00000403076 TRIM64BA6NI03 449 aa15.35■□□□□ 0.05
SDC1-203ENST00000403076 NOTOA8MTQ0 251 aa15.35■□□□□ 0.05
SDC1-203ENST00000403076 CD8AP01732 235 aa15.35■□□□□ 0.05
SDC1-203ENST00000403076 SSTR2P30874 369 aa15.35■□□□□ 0.05
SDC1-203ENST00000403076 POU3F4P49335 361 aa15.35■□□□□ 0.05
SDC1-203ENST00000403076 HNRNPA0Q13151 305 aaKnown RBP15.35■□□□□ 0.05
SDC1-203ENST00000403076 C20orf204Q6ZNR8 217 aa15.35■□□□□ 0.05
SDC1-203ENST00000403076 ANGPTL5Q86XS5 388 aa15.35■□□□□ 0.05
SDC1-203ENST00000403076 ZNF573Q86YE8 665 aa15.35■□□□□ 0.05
SDC1-203ENST00000403076 CDH26Q8IXH8 852 aa15.35■□□□□ 0.05
SDC1-203ENST00000403076 SORCS2Q96PQ0 1159 aa15.35■□□□□ 0.05
SDC1-203ENST00000403076 OR2V2Q96R30 315 aa15.35■□□□□ 0.05
SDC1-203ENST00000403076 GFI1Q99684 422 aa15.35■□□□□ 0.05
SDC1-203ENST00000403076 DCUN1D5Q9BTE7 237 aa15.35■□□□□ 0.05
SDC1-203ENST00000403076 METTL17Q9H7H0 456 aaPredicted RBP15.35■□□□□ 0.05
SDC1-203ENST00000403076 COL12A1Q99715 3063 aa15.35■□□□□ 0.05
SDC1-203ENST00000403076 GCN1Q92616 2671 aaKnown RBP15.34■□□□□ 0.05
SDC1-203ENST00000403076 IGKV1-27A0A075B6S5 117 aa15.34■□□□□ 0.05
SDC1-203ENST00000403076 TMEM210A6NLX4 147 aa15.34■□□□□ 0.05
SDC1-203ENST00000403076 PLATP00750 562 aa15.34■□□□□ 0.05
SDC1-203ENST00000403076 CD200P41217 278 aa15.34■□□□□ 0.05
SDC1-203ENST00000403076 HAAOP46952 286 aa15.34■□□□□ 0.05
SDC1-203ENST00000403076 PPOXP50336 477 aa15.34■□□□□ 0.05
SDC1-203ENST00000403076 RORCP51449 518 aa15.34■□□□□ 0.05
SDC1-203ENST00000403076 CCL8P80075 99 aa15.34■□□□□ 0.05
SDC1-203ENST00000403076 MAB21L1Q13394 359 aa15.34■□□□□ 0.05
SDC1-203ENST00000403076 PCGF3Q3KNV8 242 aa15.34■□□□□ 0.05
SDC1-203ENST00000403076 HES5Q5TA89 166 aa15.34■□□□□ 0.05
SDC1-203ENST00000403076 PRAMEF6Q5VXH4 476 aa15.34■□□□□ 0.05
SDC1-203ENST00000403076 HIST2H2BCQ6DN03 193 aa15.34■□□□□ 0.05
SDC1-203ENST00000403076 RNF144BQ7Z419 303 aa15.34■□□□□ 0.05
SDC1-203ENST00000403076 OR5D18Q8NGL1 313 aa15.34■□□□□ 0.05
SDC1-203ENST00000403076 ITLN1Q8WWA0 313 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms