RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 ZNF416Q9BWM5 594 aa8.83□□□□□ -1
VPS53-202ENST00000389040 ATG5Q9H1Y0 275 aa8.83□□□□□ -1
VPS53-202ENST00000389040 OR51J1Q9H342 316 aa8.83□□□□□ -1
VPS53-202ENST00000389040 ESRP2Q9H6T0 727 aaKnown RBP8.83□□□□□ -1
VPS53-202ENST00000389040 MTFP1Q9UDX5 166 aa8.83□□□□□ -1
VPS53-202ENST00000389040 USP9YO00507 2555 aaPredicted RBP8.83□□□□□ -1
VPS53-202ENST00000389040 PCNX1Q96RV3 2341 aa8.83□□□□□ -1
VPS53-202ENST00000389040 TRAV18A0A075B6X5 111 aa8.82□□□□□ -1
VPS53-202ENST00000389040 A0A1B0GTI1 187 aa8.82□□□□□ -1
VPS53-202ENST00000389040 KDM4BO94953 1096 aa8.82□□□□□ -1
VPS53-202ENST00000389040 CBR1P16152 277 aa8.82□□□□□ -1
VPS53-202ENST00000389040 PTAFRP25105 342 aa8.82□□□□□ -1
VPS53-202ENST00000389040 BDKRB2P30411 391 aa8.82□□□□□ -1
VPS53-202ENST00000389040 GNALP38405 381 aa8.82□□□□□ -1
VPS53-202ENST00000389040 CX3CR1P49238 355 aa8.82□□□□□ -1
VPS53-202ENST00000389040 PRKXP51817 358 aa8.82□□□□□ -1
VPS53-202ENST00000389040 CAPZA1P52907 286 aa8.82□□□□□ -1
VPS53-202ENST00000389040 ZNF121P58317 390 aaPredicted RBP8.82□□□□□ -1
VPS53-202ENST00000389040 GRB2P62993 217 aaKnown RBP8.82□□□□□ -1
VPS53-202ENST00000389040 IFITM2Q01629 132 aa8.82□□□□□ -1
VPS53-202ENST00000389040 FCN2Q15485 313 aa8.82□□□□□ -1
VPS53-202ENST00000389040 SGCAQ16586 387 aa8.82□□□□□ -1
VPS53-202ENST00000389040 TMEM108Q6UXF1 575 aa8.82□□□□□ -1
VPS53-202ENST00000389040 LYPD6Q86Y78 171 aa8.82□□□□□ -1
VPS53-202ENST00000389040 WDR31Q8NA23 367 aa8.82□□□□□ -1
VPS53-202ENST00000389040 OR1J2Q8NGS2 313 aa8.82□□□□□ -1
VPS53-202ENST00000389040 OR51E1Q8TCB6 317 aa8.82□□□□□ -1
VPS53-202ENST00000389040 GIMAP1Q8WWP7 306 aa8.82□□□□□ -1
VPS53-202ENST00000389040 DEDD2Q8WXF8 326 aa8.82□□□□□ -1
VPS53-202ENST00000389040 ZNF837Q96EG3 531 aaPredicted RBP8.82□□□□□ -1
VPS53-202ENST00000389040 ADAT3Q96EY9 351 aaPredicted RBP8.82□□□□□ -1
VPS53-202ENST00000389040 SORCS2Q96PQ0 1159 aa8.82□□□□□ -1
VPS53-202ENST00000389040 FAM172BPA6NC97 362 aa8.82□□□□□ -1
VPS53-202ENST00000389040 A6NNC1 897 aa8.82□□□□□ -1
VPS53-202ENST00000389040 RGS13O14921 159 aa8.82□□□□□ -1
VPS53-202ENST00000389040 LDLRAD4O15165 306 aa8.82□□□□□ -1
VPS53-202ENST00000389040 PEX14O75381 377 aa8.82□□□□□ -1
VPS53-202ENST00000389040 RBBP9O75884 186 aa8.82□□□□□ -1
VPS53-202ENST00000389040 IGKV3-15P01624 115 aa8.82□□□□□ -1
VPS53-202ENST00000389040 C1QBP02746 253 aa8.82□□□□□ -1
VPS53-202ENST00000389040 ALDOBP05062 364 aa8.82□□□□□ -1
VPS53-202ENST00000389040 THBDP07204 575 aa8.82□□□□□ -1
VPS53-202ENST00000389040 CST2P09228 141 aa8.82□□□□□ -1
VPS53-202ENST00000389040 CSF1P09603 554 aa8.82□□□□□ -1
VPS53-202ENST00000389040 SLC2A1P11166 492 aa8.82□□□□□ -1
VPS53-202ENST00000389040 ERP29P30040 261 aaKnown RBP8.82□□□□□ -1
VPS53-202ENST00000389040 FOXG1P55316 489 aaPredicted RBP8.82□□□□□ -1
VPS53-202ENST00000389040 CDK10Q15131 360 aa8.82□□□□□ -1
VPS53-202ENST00000389040 CD276Q5ZPR3 534 aa8.82□□□□□ -1
VPS53-202ENST00000389040 OR1M1Q8NGA1 313 aa8.82□□□□□ -1
VPS53-202ENST00000389040 OR8B12Q8NGG6 310 aa8.82□□□□□ -1
VPS53-202ENST00000389040 OR4D6Q8NGJ1 314 aa8.82□□□□□ -1
VPS53-202ENST00000389040 OR5D14Q8NGL3 314 aa8.82□□□□□ -1
VPS53-202ENST00000389040 PTX4Q96A99 478 aa8.82□□□□□ -1
VPS53-202ENST00000389040 TRAF4Q9BUZ4 470 aaPredicted RBP8.82□□□□□ -1
VPS53-202ENST00000389040 TMEM138Q9NPI0 162 aa8.82□□□□□ -1
VPS53-202ENST00000389040 B3GNT2Q9NY97 397 aa8.82□□□□□ -1
VPS53-202ENST00000389040 NKIRAS2Q9NYR9 191 aa8.82□□□□□ -1
VPS53-202ENST00000389040 TAS2R8Q9NYW2 309 aa8.82□□□□□ -1
VPS53-202ENST00000389040 EDARQ9UNE0 448 aa8.82□□□□□ -1
VPS53-202ENST00000389040 RHBDD3Q9Y3P4 386 aa8.82□□□□□ -1
VPS53-202ENST00000389040 SPTBN1Q01082 2364 aaKnown RBP8.81□□□□□ -1
VPS53-202ENST00000389040 A0A0A6YYH2 397 aa8.81□□□□□ -1
VPS53-202ENST00000389040 A6NJ64 397 aa8.81□□□□□ -1
VPS53-202ENST00000389040 IGLV1-44P01699 117 aa8.81□□□□□ -1
VPS53-202ENST00000389040 B4GALT1P15291 398 aa8.81□□□□□ -1
VPS53-202ENST00000389040 ZNF20P17024 532 aa8.81□□□□□ -1
VPS53-202ENST00000389040 RAB3AP20336 220 aa8.81□□□□□ -1
VPS53-202ENST00000389040 PRSS3P35030 304 aa8.81□□□□□ -1
VPS53-202ENST00000389040 FAUP35544 74 aaKnown RBP8.81□□□□□ -1
VPS53-202ENST00000389040 GZMKP49863 264 aa8.81□□□□□ -1
VPS53-202ENST00000389040 SSBP1Q04837 148 aaKnown RBP8.81□□□□□ -1
VPS53-202ENST00000389040 PCGF3Q3KNV8 242 aa8.81□□□□□ -1
VPS53-202ENST00000389040 HIKESHIQ53FT3 197 aa8.81□□□□□ -1
VPS53-202ENST00000389040 C9orf135Q5VTT2 229 aa8.81□□□□□ -1
VPS53-202ENST00000389040 FAAP20Q6NZ36 180 aa8.81□□□□□ -1
VPS53-202ENST00000389040 ZNF529Q6P280 563 aa8.81□□□□□ -1
VPS53-202ENST00000389040 TMEM53Q6P2H8 277 aa8.81□□□□□ -1
VPS53-202ENST00000389040 SEZ6L2Q6UXD5 910 aa8.81□□□□□ -1
VPS53-202ENST00000389040 COMMD2Q86X83 199 aa8.81□□□□□ -1
VPS53-202ENST00000389040 ZNF283Q8N7M2 679 aa8.81□□□□□ -1
VPS53-202ENST00000389040 GJC3Q8NFK1 279 aa8.81□□□□□ -1
VPS53-202ENST00000389040 NABP1Q96AH0 204 aa8.81□□□□□ -1
VPS53-202ENST00000389040 UQCC2Q9BRT2 126 aa8.81□□□□□ -1
VPS53-202ENST00000389040 METTL17Q9H7H0 456 aaPredicted RBP8.81□□□□□ -1
VPS53-202ENST00000389040 CNTD2Q9H8S5 307 aa8.81□□□□□ -1
VPS53-202ENST00000389040 GPR84Q9NQS5 396 aa8.81□□□□□ -1
VPS53-202ENST00000389040 TIMM10BQ9Y5J6 103 aa8.81□□□□□ -1
VPS53-202ENST00000389040 A0A096LPE4 126 aa8.8□□□□□ -1
VPS53-202ENST00000389040 A0A1W2PPZ6 126 aa8.8□□□□□ -1
VPS53-202ENST00000389040 PRAF2O60831 178 aa8.8□□□□□ -1
VPS53-202ENST00000389040 ERCC1P07992 297 aaPredicted RBP8.8□□□□□ -1
VPS53-202ENST00000389040 RAB6AP20340 208 aa8.8□□□□□ -1
VPS53-202ENST00000389040 CCL1P22362 96 aa8.8□□□□□ -1
VPS53-202ENST00000389040 VEGFCP49767 419 aa8.8□□□□□ -1
VPS53-202ENST00000389040 PLP2Q04941 152 aa8.8□□□□□ -1
VPS53-202ENST00000389040 ENDOGQ14249 297 aaKnown RBP8.8□□□□□ -1
VPS53-202ENST00000389040 TSC22D1Q15714 1073 aa8.8□□□□□ -1
VPS53-202ENST00000389040 FAM57BQ71RH2 274 aa8.8□□□□□ -1
VPS53-202ENST00000389040 SLC16A14Q7RTX9 510 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms