RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 C1QL1O75973 258 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 IGKV3-11P04433 115 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 AGAP20933 346 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 EIF5AP63241 154 aaKnown RBP12.1□□□□□ -0.47
USP49-201ENST00000373006 CHAF1BQ13112 559 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 IL15RAQ13261 267 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 MIDNQ504T8 468 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 LRP11Q86VZ4 500 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 GKN2Q86XP6 184 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 ASB10Q8WXI3 467 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 BSCL2Q96G97 398 aaPredicted RBP12.1□□□□□ -0.47
USP49-201ENST00000373006 C5orf34Q96MH7 638 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 PARP11Q9NR21 331 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 DNAJB11Q9UBS4 358 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 WASF3Q9UPY6 502 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 COL4A2P08572 1712 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 TCRBV21S2A2A0A5A6 115 aa12.09□□□□□ -0.47
USP49-201ENST00000373006 RPS2P15880 293 aaKnown RBP12.09□□□□□ -0.47
USP49-201ENST00000373006 LAP3P28838 519 aa12.09□□□□□ -0.47
USP49-201ENST00000373006 CDAP32320 146 aa12.09□□□□□ -0.47
USP49-201ENST00000373006 YPEL5P62699 121 aa12.09□□□□□ -0.47
USP49-201ENST00000373006 C4orf17Q53FE4 359 aa12.09□□□□□ -0.47
USP49-201ENST00000373006 GRINAQ7Z429 371 aa12.09□□□□□ -0.47
USP49-201ENST00000373006 OR9K2Q8NGE7 335 aa12.09□□□□□ -0.47
USP49-201ENST00000373006 SLC25A43Q8WUT9 341 aaPredicted RBP12.09□□□□□ -0.47
USP49-201ENST00000373006 TCTN2Q96GX1 697 aa12.09□□□□□ -0.47
USP49-201ENST00000373006 C1orf147Q96MC9 270 aaPredicted RBP12.09□□□□□ -0.47
USP49-201ENST00000373006 KCNK17Q96T54 332 aa12.09□□□□□ -0.47
USP49-201ENST00000373006 ZNF319Q9P2F9 582 aa12.09□□□□□ -0.47
USP49-201ENST00000373006 TRIOBPQ9H2D6 2365 aa12.09□□□□□ -0.47
USP49-201ENST00000373006 BTBD17A6NE02 478 aa12.09□□□□□ -0.47
USP49-201ENST00000373006 IFNA2P01563 188 aa12.09□□□□□ -0.47
USP49-201ENST00000373006 RSU1Q15404 277 aa12.09□□□□□ -0.47
USP49-201ENST00000373006 TMEM268Q5VZI3 342 aa12.09□□□□□ -0.47
USP49-201ENST00000373006 DNM1P34Q6PK57 102 aa12.09□□□□□ -0.47
USP49-201ENST00000373006 Q7L0L9 218 aa12.09□□□□□ -0.47
USP49-201ENST00000373006 TGIF2LXQ8IUE1 241 aa12.09□□□□□ -0.47
USP49-201ENST00000373006 OR5AS1Q8N127 324 aa12.09□□□□□ -0.47
USP49-201ENST00000373006 KCNG3Q8TAE7 436 aa12.09□□□□□ -0.47
USP49-201ENST00000373006 ERGIC1Q969X5 290 aa12.09□□□□□ -0.47
USP49-201ENST00000373006 C14orf144Q96I85 54 aa12.09□□□□□ -0.47
USP49-201ENST00000373006 THOC3Q96J01 351 aaKnown RBP12.09□□□□□ -0.47
USP49-201ENST00000373006 CNTNAP3Q9BZ76 1288 aa12.09□□□□□ -0.47
USP49-201ENST00000373006 SEBOXQ9HB31 216 aaPredicted RBP12.09□□□□□ -0.47
USP49-201ENST00000373006 POLR1DQ9Y2S0 133 aa12.09□□□□□ -0.47
USP49-201ENST00000373006 KPTNQ9Y664 436 aa12.09□□□□□ -0.47
USP49-201ENST00000373006 BLACEA4D250 179 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 TSPAN2O60636 221 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 SCGNO76038 276 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 ZNF205O95201 554 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 GSTP1P09211 210 aaKnown RBP12.08□□□□□ -0.48
USP49-201ENST00000373006 QDPRP09417 244 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 RAB5AP20339 215 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 CTHP32929 405 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 GSK3AP49840 483 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 BIDP55957 195 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 TLE3Q04726 772 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 SURF2Q15527 256 aaPredicted RBP12.08□□□□□ -0.48
USP49-201ENST00000373006 NSDHLQ15738 373 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 DEGS2Q6QHC5 323 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 C1QL2Q7Z5L3 287 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 PEG10Q86TG7 708 aaKnown RBP12.08□□□□□ -0.48
USP49-201ENST00000373006 OR51T1Q8NGJ9 327 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 ADAMTS18Q8TE60 1221 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 THAP3Q8WTV1 239 aaPredicted RBP12.08□□□□□ -0.48
USP49-201ENST00000373006 RLN3Q8WXF3 142 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 TCEAL7Q9BRU2 100 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 GFOD1Q9NXC2 390 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 SRPK3Q9UPE1 567 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 FTCDNL1E5RQL4 147 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 TAAR5O14804 337 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 GLI4P10075 376 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 PTGER4P35408 488 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 HSF1Q00613 529 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 GAMTQ14353 236 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 SHHQ15465 462 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 PCK2Q16822 640 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 SHISA6Q6ZSJ9 500 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 ARL6IP6Q8N6S5 226 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 UBAC2Q8NBM4 344 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 OR5B2Q96R09 309 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 MTIF3Q9H2K0 278 aaKnown RBP12.08□□□□□ -0.48
USP49-201ENST00000373006 GPR84Q9NQS5 396 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 ZNF701Q9NV72 531 aaPredicted RBP12.08□□□□□ -0.48
USP49-201ENST00000373006 OSGIN2Q9Y236 505 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 PUS1Q9Y606 427 aaKnown RBP eCLIP12.08□□□□□ -0.48
USP49-201ENST00000373006 IGHMP01871 453 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 THEGLP0DJG4 465 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 OR13C7P0DN81 318 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 ACY1Q03154 408 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 MFAP5Q13361 173 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 NAXEQ8NCW5 288 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 CRLF2Q9HC73 371 aa12.08□□□□□ -0.48
USP49-201ENST00000373006 CEACAM18A8MTB9 384 aa12.07□□□□□ -0.48
USP49-201ENST00000373006 ZNF878C9JN71 531 aa12.07□□□□□ -0.48
USP49-201ENST00000373006 RBMXP38159 391 aaKnown RBP12.07□□□□□ -0.48
USP49-201ENST00000373006 GLP1RP43220 463 aa12.07□□□□□ -0.48
USP49-201ENST00000373006 FZD2Q14332 565 aa12.07□□□□□ -0.48
USP49-201ENST00000373006 GUK1Q16774 197 aa12.07□□□□□ -0.48
USP49-201ENST00000373006 GFI1BQ5VTD9 330 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms