RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 ELAVL1Q15717 326 aaKnown RBP3.35□□□□□ -1.87
MCF2-203ENST00000370576 SYT14P1Q58G82 188 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 ZNF529Q6P280 563 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 LINGO2Q7L985 606 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 GALNT10Q86SR1 603 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 ZNF761Q86XN6 746 aaPredicted RBP3.35□□□□□ -1.87
MCF2-203ENST00000370576 PARP16Q8N5Y8 322 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 OR6K3Q8NGY3 331 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 OR14A16Q8NHC5 309 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 ZNF519Q8TB69 540 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 DYNC2LI1Q8TCX1 351 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 AKAP1Q92667 903 aaKnown RBP eCLIP3.35□□□□□ -1.87
MCF2-203ENST00000370576 EME1Q96AY2 570 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 ZFP3Q96NJ6 502 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 CENPKQ9BS16 269 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 OR51I1Q9H343 314 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 SRMSQ9H3Y6 488 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 FGF21Q9NSA1 209 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 FLRT3Q9NZU0 649 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 PRODH2Q9UF12 536 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 BAIAP2Q9UQB8 552 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 TRAPPC4Q9Y296 219 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 USP34Q70CQ2 3546 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 SPENQ96T58 3664 aaKnown RBP3.35□□□□□ -1.87
MCF2-203ENST00000370576 NSG1A0A0A6YYJ2 146 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 TRABD2BA6NFA1 517 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 A8MU76 341 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 F8VVB4 439 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 F8VWA3 439 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 G3V2T6 193 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 J3QLI3 93 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 SLC1A7O00341 560 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 SYNGR1O43759 233 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 SS18L1O75177 396 aaPredicted RBP3.35□□□□□ -1.87
MCF2-203ENST00000370576 PGCP20142 388 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 MATN1P21941 496 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 SSTR2P30874 369 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 FGF9P31371 208 aaPredicted RBP3.35□□□□□ -1.87
MCF2-203ENST00000370576 XKP51811 444 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 SMIM11AP58511 58 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 OC90Q02509 493 aaPredicted RBP3.35□□□□□ -1.87
MCF2-203ENST00000370576 FGL1Q08830 312 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 ZNF155Q12901 538 aaPredicted RBP3.35□□□□□ -1.87
MCF2-203ENST00000370576 EBPQ15125 230 aaKnown RBP3.35□□□□□ -1.87
MCF2-203ENST00000370576 DUSP5Q16690 384 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 ACTL10Q5JWF8 245 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 OR8G2PQ6IF36 304 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 ULK3Q6PHR2 472 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 RPTNQ6XPR3 784 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 GDPGP1Q6ZNW5 385 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 C9orf40Q8IXQ3 194 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 IZUMO1Q8IYV9 350 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 CBR4Q8N4T8 237 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 HSD17B11Q8NBQ5 300 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 OR10V1Q8NGI7 309 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 RNASEH2CQ8TDP1 164 aaKnown RBP3.35□□□□□ -1.87
MCF2-203ENST00000370576 LCN9Q8WX39 176 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 COL21A1Q96P44 957 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 EBPLQ9BY08 206 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 VN1R1Q9GZP7 353 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 GAREM1Q9H706 876 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 CCDC59Q9P031 241 aaKnown RBP3.35□□□□□ -1.87
MCF2-203ENST00000370576 ZNF391Q9UJN7 358 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 FLVCR2Q9UPI3 526 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 MRPS28Q9Y2Q9 187 aaKnown RBP3.35□□□□□ -1.87
MCF2-203ENST00000370576 LAMA2P24043 3122 aaKnown RBP3.35□□□□□ -1.87
MCF2-203ENST00000370576 SDK2Q58EX2 2172 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 A0A087WUJ7 227 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 A0A1B0GX78 115 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 EI24O14681 340 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 TFECO14948 347 aaPredicted RBP3.35□□□□□ -1.87
MCF2-203ENST00000370576 XPNPEP2O43895 674 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 BGLAPP02818 100 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 ALDOBP05062 364 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 NOVA1P51513 510 aaKnown RBP3.35□□□□□ -1.87
MCF2-203ENST00000370576 H3F3AP84243 136 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 OCA2Q04671 838 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 CD47Q08722 323 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 ODF4Q2M2E3 257 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 ACSM3Q53FZ2 586 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 EIPR1Q53HC9 387 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 HLA-DQA1Q5Y7H0 255 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 SCIMPQ6UWF3 145 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 ZNF620Q6ZNG0 422 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 PRSS41Q7RTY9 318 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 ANKRD37Q7Z713 158 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 LGI3Q8N145 548 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 DMBX1Q8NFW5 382 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 GNPDA2Q8TDQ7 276 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 CA5BP1Q8WTZ4 195 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 SLC35G5Q96KT7 338 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 CNN2Q99439 309 aaKnown RBP3.35□□□□□ -1.87
MCF2-203ENST00000370576 MAP3K3Q99759 626 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 ING2Q9H160 280 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 CDC42EP3Q9UKI2 254 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 PPP1R3CQ9UQK1 317 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 TCF19Q9Y242 345 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 AMDHD2Q9Y303 409 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 UGT2A1Q9Y4X1 527 aa3.35□□□□□ -1.87
MCF2-203ENST00000370576 WISP2O76076 250 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms