RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 SEMG1P04279 462 aa17.52■□□□□ 0.39
CCDC88B-202ENST00000356786 CDKN2AP42771 156 aaKnown RBP17.52■□□□□ 0.39
CCDC88B-202ENST00000356786 LPAL2Q16609 132 aa17.52■□□□□ 0.39
CCDC88B-202ENST00000356786 TCTN1Q2MV58 587 aa17.52■□□□□ 0.39
CCDC88B-202ENST00000356786 LHX8Q68G74 356 aa17.52■□□□□ 0.39
CCDC88B-202ENST00000356786 OR5C1Q8NGR4 320 aa17.52■□□□□ 0.39
CCDC88B-202ENST00000356786 PINX1Q96BK5 328 aaKnown RBP17.52■□□□□ 0.39
CCDC88B-202ENST00000356786 SEC11CQ9BY50 192 aa17.52■□□□□ 0.39
CCDC88B-202ENST00000356786 SIRPB1O00241 398 aa17.52■□□□□ 0.39
CCDC88B-202ENST00000356786 FCER1GP30273 86 aa17.52■□□□□ 0.39
CCDC88B-202ENST00000356786 PPIAP62937 165 aaKnown RBP17.52■□□□□ 0.39
CCDC88B-202ENST00000356786 PMS2P11Q13670 270 aa17.52■□□□□ 0.39
CCDC88B-202ENST00000356786 FBXL14Q8N1E6 418 aa17.52■□□□□ 0.39
CCDC88B-202ENST00000356786 SLC24A4Q8NFF2 622 aa17.52■□□□□ 0.39
CCDC88B-202ENST00000356786 FAM174AQ8TBP5 190 aa17.52■□□□□ 0.39
CCDC88B-202ENST00000356786 PP6455Q8WZ26 134 aa17.52■□□□□ 0.39
CCDC88B-202ENST00000356786 OXGR1Q96P68 337 aa17.52■□□□□ 0.39
CCDC88B-202ENST00000356786 SHARPINQ9H0F6 387 aa17.52■□□□□ 0.39
CCDC88B-202ENST00000356786 IL21Q9HBE4 155 aa17.52■□□□□ 0.39
CCDC88B-202ENST00000356786 TMED3Q9Y3Q3 217 aa17.52■□□□□ 0.39
CCDC88B-202ENST00000356786 NKX2-2O95096 273 aa17.51■□□□□ 0.39
CCDC88B-202ENST00000356786 CRHP06850 196 aa17.51■□□□□ 0.39
CCDC88B-202ENST00000356786 PNLIPRP2P54317 469 aa17.51■□□□□ 0.39
CCDC88B-202ENST00000356786 TIAL1Q01085 375 aaKnown RBP eCLIP17.51■□□□□ 0.39
CCDC88B-202ENST00000356786 NTNG2Q96CW9 530 aa17.51■□□□□ 0.39
CCDC88B-202ENST00000356786 CIB3Q96Q77 187 aaPredicted RBP17.51■□□□□ 0.39
CCDC88B-202ENST00000356786 SIRT3Q9NTG7 399 aaPredicted RBP17.51■□□□□ 0.39
CCDC88B-202ENST00000356786 POMT1Q9Y6A1 747 aa17.51■□□□□ 0.39
CCDC88B-202ENST00000356786 MUCL1Q96DR8 90 aa17.51■□□□□ 0.39
CCDC88B-202ENST00000356786 J3QR89 54 aa17.51■□□□□ 0.39
CCDC88B-202ENST00000356786 CD200P41217 278 aa17.51■□□□□ 0.39
CCDC88B-202ENST00000356786 LYSMD4Q5XG99 296 aa17.51■□□□□ 0.39
CCDC88B-202ENST00000356786 OR4D11Q8NGI4 311 aa17.51■□□□□ 0.39
CCDC88B-202ENST00000356786 ERGIC1Q969X5 290 aa17.51■□□□□ 0.39
CCDC88B-202ENST00000356786 PAPPA2Q9BXP8 1791 aa17.51■□□□□ 0.39
CCDC88B-202ENST00000356786 PMCHP20382 165 aa17.51■□□□□ 0.39
CCDC88B-202ENST00000356786 CDAP32320 146 aa17.51■□□□□ 0.39
CCDC88B-202ENST00000356786 TAS2R45P59539 299 aa17.51■□□□□ 0.39
CCDC88B-202ENST00000356786 ANKRD33Q7Z3H0 272 aa17.51■□□□□ 0.39
CCDC88B-202ENST00000356786 YRDCQ86U90 279 aaKnown RBP17.51■□□□□ 0.39
CCDC88B-202ENST00000356786 UTP23Q9BRU9 249 aaKnown RBP17.51■□□□□ 0.39
CCDC88B-202ENST00000356786 FBXO34Q9NWN3 711 aa17.51■□□□□ 0.39
CCDC88B-202ENST00000356786 RASL12Q9NYN1 266 aa17.51■□□□□ 0.39
CCDC88B-202ENST00000356786 AMDHD2Q9Y303 409 aa17.51■□□□□ 0.39
CCDC88B-202ENST00000356786 UBE2L5PA0A1B0GUS4 154 aa17.5■□□□□ 0.39
CCDC88B-202ENST00000356786 CST2P09228 141 aa17.5■□□□□ 0.39
CCDC88B-202ENST00000356786 CTGFP29279 349 aa17.5■□□□□ 0.39
CCDC88B-202ENST00000356786 TMEM91Q6ZNR0 172 aa17.5■□□□□ 0.39
CCDC88B-202ENST00000356786 ZNF683Q8IZ20 524 aa17.5■□□□□ 0.39
CCDC88B-202ENST00000356786 MORN4Q8NDC4 146 aa17.5■□□□□ 0.39
CCDC88B-202ENST00000356786 APH1AQ96BI3 265 aa17.5■□□□□ 0.39
CCDC88B-202ENST00000356786 RTL8AQ9BWD3 113 aa17.5■□□□□ 0.39
CCDC88B-202ENST00000356786 LPAR3Q9UBY5 353 aa17.5■□□□□ 0.39
CCDC88B-202ENST00000356786 HAAOP46952 286 aa17.5■□□□□ 0.39
CCDC88B-202ENST00000356786 KLF9Q13886 244 aaPredicted RBP17.5■□□□□ 0.39
CCDC88B-202ENST00000356786 DRAM2Q6UX65 266 aa17.5■□□□□ 0.39
CCDC88B-202ENST00000356786 SPPL3Q8TCT6 385 aa17.5■□□□□ 0.39
CCDC88B-202ENST00000356786 TRMT61AQ96FX7 289 aaKnown RBP17.5■□□□□ 0.39
CCDC88B-202ENST00000356786 ADGRG7Q96K78 797 aa17.5■□□□□ 0.39
CCDC88B-202ENST00000356786 KCNK15Q9H427 330 aa17.5■□□□□ 0.39
CCDC88B-202ENST00000356786 FAM24AA6NFZ4 105 aa17.5■□□□□ 0.39
CCDC88B-202ENST00000356786 DHHO43323 396 aa17.5■□□□□ 0.39
CCDC88B-202ENST00000356786 CD46P15529 392 aa17.5■□□□□ 0.39
CCDC88B-202ENST00000356786 ZNF17P17021 662 aa17.5■□□□□ 0.39
CCDC88B-202ENST00000356786 C21orf58P58505 322 aa17.5■□□□□ 0.39
CCDC88B-202ENST00000356786 TMEM241Q24JQ0 296 aa17.5■□□□□ 0.39
CCDC88B-202ENST00000356786 ASB16Q96NS5 453 aa17.5■□□□□ 0.39
CCDC88B-202ENST00000356786 POLDIP2Q9Y2S7 368 aa17.5■□□□□ 0.39
CCDC88B-202ENST00000356786 OR51B4Q9Y5P0 310 aa17.5■□□□□ 0.39
CCDC88B-202ENST00000356786 GSK3AP49840 483 aa17.5■□□□□ 0.39
CCDC88B-202ENST00000356786 HIST1H3AP68431 136 aa17.5■□□□□ 0.39
CCDC88B-202ENST00000356786 OR11L1Q8NGX0 322 aa17.5■□□□□ 0.39
CCDC88B-202ENST00000356786 SLC35E1Q96K37 410 aa17.5■□□□□ 0.39
CCDC88B-202ENST00000356786 CXCL12P48061 93 aa17.49■□□□□ 0.39
CCDC88B-202ENST00000356786 ZNF273Q14593 569 aa17.49■□□□□ 0.39
CCDC88B-202ENST00000356786 CORO2AQ92828 525 aa17.49■□□□□ 0.39
CCDC88B-202ENST00000356786 OGG1O15527 345 aa17.49■□□□□ 0.39
CCDC88B-202ENST00000356786 GALR1P47211 349 aa17.49■□□□□ 0.39
CCDC88B-202ENST00000356786 FMODQ06828 376 aa17.49■□□□□ 0.39
CCDC88B-202ENST00000356786 OR2C3Q8N628 320 aa17.49■□□□□ 0.39
CCDC88B-202ENST00000356786 WDR34Q96EX3 536 aa17.49■□□□□ 0.39
CCDC88B-202ENST00000356786 RAB33BQ9H082 229 aa17.49■□□□□ 0.39
CCDC88B-202ENST00000356786 PPP1R14DQ9NXH3 145 aa17.49■□□□□ 0.39
CCDC88B-202ENST00000356786 LINC01553A4QN01 128 aa17.49■□□□□ 0.39
CCDC88B-202ENST00000356786 H0YIG0 161 aa17.49■□□□□ 0.39
CCDC88B-202ENST00000356786 K7EQM0 130 aa17.49■□□□□ 0.39
CCDC88B-202ENST00000356786 TOX4O94842 621 aa17.49■□□□□ 0.39
CCDC88B-202ENST00000356786 TMEM11P17152 192 aa17.49■□□□□ 0.39
CCDC88B-202ENST00000356786 LSM11P83369 360 aaKnown RBP eCLIP17.49■□□□□ 0.39
CCDC88B-202ENST00000356786 ZNF784Q8NCA9 323 aaPredicted RBP17.49■□□□□ 0.39
CCDC88B-202ENST00000356786 C6orf106Q9H6K1 298 aaPredicted RBP17.49■□□□□ 0.39
CCDC88B-202ENST00000356786 FER1L6Q2WGJ9 1857 aa17.49■□□□□ 0.39
CCDC88B-202ENST00000356786 GPR37O15354 613 aa17.49■□□□□ 0.39
CCDC88B-202ENST00000356786 HLA-DRB3P79483 266 aa17.49■□□□□ 0.39
CCDC88B-202ENST00000356786 KISS1Q15726 138 aa17.49■□□□□ 0.39
CCDC88B-202ENST00000356786 ETFDHQ16134 617 aa17.49■□□□□ 0.39
CCDC88B-202ENST00000356786 TMEM65Q6PI78 240 aa17.49■□□□□ 0.39
CCDC88B-202ENST00000356786 C12orf49Q9H741 205 aa17.49■□□□□ 0.39
CCDC88B-202ENST00000356786 TRAV34A0A0B4J273 112 aa17.48■□□□□ 0.39
CCDC88B-202ENST00000356786 METAP1P53582 386 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms