RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 CXorf67Q86X51 503 aaPredicted RBP11.56□□□□□ -0.56
HMGB1-202ENST00000339872 C1orf162Q8NEQ5 155 aaPredicted RBP11.56□□□□□ -0.56
HMGB1-202ENST00000339872 OR10R2Q8NGX6 335 aa11.56□□□□□ -0.56
HMGB1-202ENST00000339872 PAPOLGQ9BWT3 736 aaKnown RBP11.56□□□□□ -0.56
HMGB1-202ENST00000339872 TAS2R8Q9NYW2 309 aa11.56□□□□□ -0.56
HMGB1-202ENST00000339872 SLC7A11Q9UPY5 501 aa11.56□□□□□ -0.56
HMGB1-202ENST00000339872 NAP1L6A6NFF2 107 aa11.55□□□□□ -0.56
HMGB1-202ENST00000339872 ZNF850A8MQ14 1090 aa11.55□□□□□ -0.56
HMGB1-202ENST00000339872 SULT1C2O00338 296 aa11.55□□□□□ -0.56
HMGB1-202ENST00000339872 MGMTP16455 207 aa11.55□□□□□ -0.56
HMGB1-202ENST00000339872 TDGF1P3P51864 188 aa11.55□□□□□ -0.56
HMGB1-202ENST00000339872 ACTBP60709 375 aa11.55□□□□□ -0.56
HMGB1-202ENST00000339872 ZP1P60852 638 aa11.55□□□□□ -0.56
HMGB1-202ENST00000339872 ACTG1P63261 375 aa11.55□□□□□ -0.56
HMGB1-202ENST00000339872 ZNF260Q3ZCT1 412 aa11.55□□□□□ -0.56
HMGB1-202ENST00000339872 CDNFQ49AH0 187 aa11.55□□□□□ -0.56
HMGB1-202ENST00000339872 OLFML2AQ68BL7 652 aa11.55□□□□□ -0.56
HMGB1-202ENST00000339872 SFRP4Q6FHJ7 346 aaPredicted RBP11.55□□□□□ -0.56
HMGB1-202ENST00000339872 AQP3Q92482 292 aa11.55□□□□□ -0.56
HMGB1-202ENST00000339872 TECTBQ96PL2 329 aa11.55□□□□□ -0.56
HMGB1-202ENST00000339872 URM1Q9BTM9 101 aaKnown RBP11.55□□□□□ -0.56
HMGB1-202ENST00000339872 SELENOIQ9C0D9 397 aa11.55□□□□□ -0.56
HMGB1-202ENST00000339872 SCPEP1Q9HB40 452 aa11.55□□□□□ -0.56
HMGB1-202ENST00000339872 COPZ2Q9P299 210 aa11.55□□□□□ -0.56
HMGB1-202ENST00000339872 GPR160Q9UJ42 338 aa11.55□□□□□ -0.56
HMGB1-202ENST00000339872 NUBP2Q9Y5Y2 271 aa11.55□□□□□ -0.56
HMGB1-202ENST00000339872 PTPRQQ9UMZ3 2332 aa11.55□□□□□ -0.56
HMGB1-202ENST00000339872 SPRY1O43609 319 aaPredicted RBP11.55□□□□□ -0.56
HMGB1-202ENST00000339872 CRHP06850 196 aa11.55□□□□□ -0.56
HMGB1-202ENST00000339872 CHRM2P08172 466 aa11.55□□□□□ -0.56
HMGB1-202ENST00000339872 GTF2F2P13984 249 aa11.55□□□□□ -0.56
HMGB1-202ENST00000339872 GNB3P16520 340 aa11.55□□□□□ -0.56
HMGB1-202ENST00000339872 EIF2S3LQ2VIR3 472 aaKnown RBP11.55□□□□□ -0.56
HMGB1-202ENST00000339872 RTN4RL2Q86UN3 420 aa11.55□□□□□ -0.56
HMGB1-202ENST00000339872 NUDT16L1Q9BRJ7 211 aaKnown RBP11.55□□□□□ -0.56
HMGB1-202ENST00000339872 C1QTNF6Q9BXI9 259 aa11.55□□□□□ -0.56
HMGB1-202ENST00000339872 OPA3Q9H6K4 179 aa11.55□□□□□ -0.56
HMGB1-202ENST00000339872 CDH20Q9HBT6 801 aa11.55□□□□□ -0.56
HMGB1-202ENST00000339872 ETAA1Q9NY74 926 aa11.55□□□□□ -0.56
HMGB1-202ENST00000339872 NPAP1Q9NZP6 1156 aa11.55□□□□□ -0.56
HMGB1-202ENST00000339872 ALG5Q9Y673 324 aa11.55□□□□□ -0.56
HMGB1-202ENST00000339872 BSNQ9UPA5 3926 aa11.55□□□□□ -0.56
HMGB1-202ENST00000339872 SOCS1O15524 211 aa11.54□□□□□ -0.56
HMGB1-202ENST00000339872 ANGPTL7O43827 346 aa11.54□□□□□ -0.56
HMGB1-202ENST00000339872 AGFG2O95081 481 aa11.54□□□□□ -0.56
HMGB1-202ENST00000339872 HOXB1P14653 301 aaPredicted RBP11.54□□□□□ -0.56
HMGB1-202ENST00000339872 FAUP35544 74 aaKnown RBP11.54□□□□□ -0.56
HMGB1-202ENST00000339872 FUT6P51993 359 aa11.54□□□□□ -0.56
HMGB1-202ENST00000339872 ATP1B3P54709 279 aa11.54□□□□□ -0.56
HMGB1-202ENST00000339872 RPS27AP62979 156 aaKnown RBP11.54□□□□□ -0.56
HMGB1-202ENST00000339872 SSBP1Q04837 148 aaKnown RBP11.54□□□□□ -0.56
HMGB1-202ENST00000339872 MRPL49Q13405 166 aaKnown RBP11.54□□□□□ -0.56
HMGB1-202ENST00000339872 FAM189A2Q15884 450 aa11.54□□□□□ -0.56
HMGB1-202ENST00000339872 SPATA46Q5T0L3 261 aa11.54□□□□□ -0.56
HMGB1-202ENST00000339872 BEND4Q6ZU67 534 aa11.54□□□□□ -0.56
HMGB1-202ENST00000339872 BHLHE23Q8NDY6 225 aa11.54□□□□□ -0.56
HMGB1-202ENST00000339872 OR56B1Q8NGI3 324 aa11.54□□□□□ -0.56
HMGB1-202ENST00000339872 OR51T1Q8NGJ9 327 aa11.54□□□□□ -0.56
HMGB1-202ENST00000339872 OR5L1Q8NGL2 311 aa11.54□□□□□ -0.56
HMGB1-202ENST00000339872 CHAC2Q8WUX2 184 aa11.54□□□□□ -0.56
HMGB1-202ENST00000339872 CRIM1Q9NZV1 1036 aa11.54□□□□□ -0.56
HMGB1-202ENST00000339872 SPTBN4Q9H254 2564 aa11.54□□□□□ -0.56
HMGB1-202ENST00000339872 TIMP3P35625 211 aa11.54□□□□□ -0.56
HMGB1-202ENST00000339872 PRDX4Q13162 271 aa11.54□□□□□ -0.56
HMGB1-202ENST00000339872 CDH24Q86UP0 819 aa11.54□□□□□ -0.56
HMGB1-202ENST00000339872 FJX1Q86VR8 437 aa11.54□□□□□ -0.56
HMGB1-202ENST00000339872 FTMTQ8N4E7 242 aa11.54□□□□□ -0.56
HMGB1-202ENST00000339872 WDR31Q8NA23 367 aa11.54□□□□□ -0.56
HMGB1-202ENST00000339872 CSNK2A3Q8NEV1 391 aa11.54□□□□□ -0.56
HMGB1-202ENST00000339872 OR4C16Q8NGL9 310 aa11.54□□□□□ -0.56
HMGB1-202ENST00000339872 OR8S1Q8NH09 359 aa11.54□□□□□ -0.56
HMGB1-202ENST00000339872 NUDCD2Q8WVJ2 157 aa11.54□□□□□ -0.56
HMGB1-202ENST00000339872 RAB3CQ96E17 227 aa11.54□□□□□ -0.56
HMGB1-202ENST00000339872 EIF3KQ9UBQ5 218 aaKnown RBP11.54□□□□□ -0.56
HMGB1-202ENST00000339872 AKAIN1P0CW23 69 aa11.53□□□□□ -0.56
HMGB1-202ENST00000339872 P2RY6Q15077 328 aa11.53□□□□□ -0.56
HMGB1-202ENST00000339872 RSU1Q15404 277 aa11.53□□□□□ -0.56
HMGB1-202ENST00000339872 PRR30Q53SZ7 412 aaPredicted RBP11.53□□□□□ -0.56
HMGB1-202ENST00000339872 GFRALQ6UXV0 394 aa11.53□□□□□ -0.56
HMGB1-202ENST00000339872 BTN2A1Q7KYR7 527 aa11.53□□□□□ -0.56
HMGB1-202ENST00000339872 BHLHA15Q7RTS1 189 aaPredicted RBP11.53□□□□□ -0.56
HMGB1-202ENST00000339872 TRAPPC6BQ86SZ2 158 aa11.53□□□□□ -0.56
HMGB1-202ENST00000339872 STEAP2Q8NFT2 490 aa11.53□□□□□ -0.56
HMGB1-202ENST00000339872 OR4D10Q8NGI6 311 aa11.53□□□□□ -0.56
HMGB1-202ENST00000339872 DVL3Q92997 716 aaPredicted RBP11.53□□□□□ -0.56
HMGB1-202ENST00000339872 WBP1Q96G27 269 aa11.53□□□□□ -0.56
HMGB1-202ENST00000339872 BOD1Q96IK1 185 aa11.53□□□□□ -0.56
HMGB1-202ENST00000339872 METTL9Q9H1A3 318 aa11.53□□□□□ -0.56
HMGB1-202ENST00000339872 C20orf85Q9H1P6 137 aa11.53□□□□□ -0.56
HMGB1-202ENST00000339872 CD300LBA8K4G0 201 aa11.53□□□□□ -0.56
HMGB1-202ENST00000339872 PRRG2O14669 202 aa11.53□□□□□ -0.56
HMGB1-202ENST00000339872 SMPD2O60906 423 aa11.53□□□□□ -0.56
HMGB1-202ENST00000339872 HTR3BO95264 441 aa11.53□□□□□ -0.56
HMGB1-202ENST00000339872 DHFRP00374 187 aa11.53□□□□□ -0.56
HMGB1-202ENST00000339872 CSTBP04080 98 aaKnown RBP11.53□□□□□ -0.56
HMGB1-202ENST00000339872 CD3DP04234 171 aa11.53□□□□□ -0.56
HMGB1-202ENST00000339872 CBR1P16152 277 aa11.53□□□□□ -0.56
HMGB1-202ENST00000339872 IL32P24001 234 aa11.53□□□□□ -0.56
HMGB1-202ENST00000339872 BTG1P62324 171 aa11.53□□□□□ -0.56
HMGB1-202ENST00000339872 PLAC9Q5JTB6 97 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms