RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 TAF9Q16594 264 aa8.93□□□□□ -0.98
USP54-201ENST00000339859 LIN7CQ9NUP9 197 aaKnown RBP8.93□□□□□ -0.98
USP54-201ENST00000339859 IFNA4P05014 189 aa8.93□□□□□ -0.98
USP54-201ENST00000339859 KCNJ3P48549 501 aa8.93□□□□□ -0.98
USP54-201ENST00000339859 RAB7AP51149 207 aa8.93□□□□□ -0.98
USP54-201ENST00000339859 KISS1Q15726 138 aa8.93□□□□□ -0.98
USP54-201ENST00000339859 SFRP5Q5T4F7 317 aa8.93□□□□□ -0.98
USP54-201ENST00000339859 PIP4P1Q86T03 277 aa8.93□□□□□ -0.98
USP54-201ENST00000339859 RPEQ96AT9 228 aa8.93□□□□□ -0.98
USP54-201ENST00000339859 SLC7A10Q9NS82 523 aa8.93□□□□□ -0.98
USP54-201ENST00000339859 ZNF275Q9NSD4 429 aaPredicted RBP8.93□□□□□ -0.98
USP54-201ENST00000339859 OR6C3Q9NZP0 311 aa8.93□□□□□ -0.98
USP54-201ENST00000339859 CACFD1Q9UGQ2 172 aa8.93□□□□□ -0.98
USP54-201ENST00000339859 SERPINE3A8MV23 424 aa8.93□□□□□ -0.98
USP54-201ENST00000339859 PHF1O43189 567 aaPredicted RBP8.93□□□□□ -0.98
USP54-201ENST00000339859 HLA-AP01891 365 aaKnown RBP8.93□□□□□ -0.98
USP54-201ENST00000339859 HLA-DOBP13765 273 aa8.93□□□□□ -0.98
USP54-201ENST00000339859 CATSPERDQ86XM0 798 aa8.93□□□□□ -0.98
USP54-201ENST00000339859 LINC00470Q9BZP3 86 aa8.93□□□□□ -0.98
USP54-201ENST00000339859 SHARPINQ9H0F6 387 aa8.93□□□□□ -0.98
USP54-201ENST00000339859 GBF1Q92538 1859 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 IFNA2P01563 188 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 SERPINF1P36955 418 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 NSUN5P2Q63ZY6 315 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 C12orf45Q8N5I9 185 aaPredicted RBP8.92□□□□□ -0.98
USP54-201ENST00000339859 IFITM5A6NNB3 132 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 ALOX5APP20292 161 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 ZNF468Q5VIY5 522 aaPredicted RBP8.92□□□□□ -0.98
USP54-201ENST00000339859 OR52W1Q6IF63 320 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 BEST4Q8NFU0 473 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 OR8D4Q8NGM9 314 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 CA10Q9NS85 328 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 SSUH2Q9Y2M2 353 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 ERVH48-1M5A8F1 160 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 PTP4A3O75365 173 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 NGFP01138 241 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 PRF1P14222 555 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 OPRL1P41146 370 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 STEAP3Q658P3 488 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 ARL11Q969Q4 196 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 TAS2R5Q9NYW4 299 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 COPS3Q9UNS2 423 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 E9PLN8 166 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 C3orf80F5H4A9 247 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 SULT1C2O00338 296 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 SHOXO15266 292 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 IGHMP01871 453 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 RFPL3SP0C7P2 107 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 GNB3P16520 340 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 RAB6AP20340 208 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 NPY4RP50391 375 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 TESK1Q15569 626 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 SLC9A3R2Q15599 337 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 LYPD4Q6UWN0 246 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 PARP16Q8N5Y8 322 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 DCUN1D4Q92564 292 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 RPL3LQ92901 407 aaKnown RBP8.92□□□□□ -0.98
USP54-201ENST00000339859 RNASE6Q93091 150 aaKnown RBP8.92□□□□□ -0.98
USP54-201ENST00000339859 VKORC1Q9BQB6 163 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 DUSP21Q9H596 190 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 TGFBR3LH3BV60 316 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 ACSF3Q4G176 576 aaPredicted RBP8.92□□□□□ -0.98
USP54-201ENST00000339859 Q6ZT83 130 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 OR2S2Q9NQN1 319 aa8.92□□□□□ -0.98
USP54-201ENST00000339859 A1L4Q6 167 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 C17orf112F2Z3M2 114 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 K7ENP7 123 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 TXNDC12O95881 172 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 CLEC2LP0C7M8 214 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 CPN1P15169 458 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 IGFBP7Q16270 282 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 BMPERQ8N8U9 685 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 C1orf162Q8NEQ5 155 aaPredicted RBP8.91□□□□□ -0.98
USP54-201ENST00000339859 SLC26A10Q8NG04 563 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 OR10AD1Q8NGE0 317 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 OR13D1Q8NGV5 346 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 TMEM54Q969K7 222 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 WDYHV1Q96HA8 205 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 ZNF251Q9BRH9 671 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 SLC17A5Q9NRA2 495 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 GMDSO60547 372 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 PTGFRP43088 359 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 RRAS2P62070 204 aaPredicted RBP8.91□□□□□ -0.98
USP54-201ENST00000339859 AKR1C8PQ5T2L2 129 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 SLC25A47Q6Q0C1 308 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 LINC00596Q86U02 117 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 PRSS27Q9BQR3 290 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 PPIAL4EA0A075B759 164 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 PPIAL4DF5H284 164 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 TMPRSS2O15393 492 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 NTN1O95631 604 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 OR8U8P0C7N1 319 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 PPIAL4FP0DN26 164 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 TBPP20226 339 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 GALP22466 123 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 GIFP27352 417 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 PRAMEF5Q5TYX0 476 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 PRAMEF6Q5VXH4 476 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 LAX1Q8IWV1 398 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 RNF133Q8WVZ7 376 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 163 ms