RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 C3orf80F5H4A9 247 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 XRCC3O43542 346 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 BPNT1O95861 308 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 MPIG6BO95866 241 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 IGLV1-44P01699 117 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 ZNF35P13682 527 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 PSMB1P20618 241 aaKnown RBP3.56□□□□□ -1.84
MCF2-201ENST00000338585 VAMP1P23763 118 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 CALCRP30988 508 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 OPRM1P35372 400 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 MPV17P39210 176 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 PTGFRP43088 359 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 NR4A2P43354 598 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 DEFA1P59665 94 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 DEFA3P59666 94 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 ZP1P60852 638 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 PPP1CBP62140 327 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 RBPJQ06330 500 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 PRDX4Q13162 271 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 ASAH1Q13510 395 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 ZNF57Q68EA5 555 aaPredicted RBP3.56□□□□□ -1.84
MCF2-201ENST00000338585 KRT74Q7RTS7 529 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 BATF2Q8N1L9 274 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 C17orf78Q8N4C9 275 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 OR1J1Q8NGS3 322 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 SLC25A40Q8TBP6 338 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 SMIM4Q8WVI0 70 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 HPSE2Q8WWQ2 592 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 DMRTA2Q96SC8 542 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 ACTR6Q9GZN1 396 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 ELL3Q9HB65 397 aaPredicted RBP3.56□□□□□ -1.84
MCF2-201ENST00000338585 TBCCD1Q9NVR7 557 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 KLK11Q9UBX7 282 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 KCNN3Q9UGI6 736 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 ING4Q9UNL4 249 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 ITPR1Q14643 2758 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 IGHV2OR16-5A0A0B4J2B6 119 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 IGKV1-12A0A0C4DH73 117 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 M0R1B8 84 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 RAB27BO00194 218 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 ATXN7O15265 892 aaPredicted RBP3.55□□□□□ -1.84
MCF2-201ENST00000338585 ORC5O43913 435 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 CDC14BO60729 498 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 CRTAPO75718 401 aaPredicted RBP3.55□□□□□ -1.84
MCF2-201ENST00000338585 ALX3O95076 343 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 PTTG1O95997 202 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 IGKV1D-12P01611 117 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 TMEM225BP0DP42 221 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 NAT2P11245 290 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 SERPINA2P20848 420 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 INPP1P49441 399 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 UCP2P55851 309 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 PITPNAQ00169 270 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 MRPL49Q13405 166 aaKnown RBP3.55□□□□□ -1.84
MCF2-201ENST00000338585 CNN3Q15417 329 aaKnown RBP3.55□□□□□ -1.84
MCF2-201ENST00000338585 TIMM23BQ5SRD1 257 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 SEZ6L2Q6UXD5 910 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 CCBE1Q6UXH8 406 aaPredicted RBP3.55□□□□□ -1.84
MCF2-201ENST00000338585 BAIAP2L2Q6UXY1 529 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 MRGPRGQ86SM5 289 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 CALHM1Q8IU99 346 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 CELF2-AS1Q8N7Q2 184 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 C19orf18Q8NEA5 215 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 SPSB1Q96BD6 273 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 BORCS8Q96FH0 119 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 COX4I2Q96KJ9 171 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 LPAR5Q9H1C0 372 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 NEK6Q9HC98 313 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 DIABLOQ9NR28 239 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 ZNF581Q9P0T4 197 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 EIF3KQ9UBQ5 218 aaKnown RBP3.55□□□□□ -1.84
MCF2-201ENST00000338585 FZR1Q9UM11 496 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 OSGIN2Q9Y236 505 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 TMA7Q9Y2S6 64 aaKnown RBP3.55□□□□□ -1.84
MCF2-201ENST00000338585 AMDHD2Q9Y303 409 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 MEMO1Q9Y316 297 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 IGHV3-64DA0A0J9YX35 117 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 PQLC2LA1A4F0 135 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 TMEM8BA6NDV4 472 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 TMEM235A6NFC5 223 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 CTDSPLO15194 276 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 SOCS1O15524 211 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 LYRM1O43325 122 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 GSTZ1O43708 216 aaPredicted RBP3.55□□□□□ -1.84
MCF2-201ENST00000338585 ICMTO60725 284 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 CST4P01036 141 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 RAB6AP20340 208 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 PRKACBP22694 351 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 CA6P23280 308 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 GDNFP39905 211 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 MNDAP41218 407 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 CA7P43166 264 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 KIR2DL3P43628 341 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 VEGFCP49767 419 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 RBP2P50120 134 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 GPM6AP51674 278 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 NAAAQ02083 359 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 SNTB1Q13884 538 aaKnown RBP3.55□□□□□ -1.84
MCF2-201ENST00000338585 GPR176Q14439 515 aa3.55□□□□□ -1.84
MCF2-201ENST00000338585 PPA1Q15181 289 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms