RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 CDPF1Q6NVV7 123 aa11.84□□□□□ -0.51
SKA3-202ENST00000314759 CSNK2A3Q8NEV1 391 aa11.84□□□□□ -0.51
SKA3-202ENST00000314759 OR1L3Q8NH93 324 aa11.84□□□□□ -0.51
SKA3-202ENST00000314759 MVB12AQ96EY5 273 aa11.84□□□□□ -0.51
SKA3-202ENST00000314759 TCEAL7Q9BRU2 100 aa11.84□□□□□ -0.51
SKA3-202ENST00000314759 SMIM3Q9BZL3 60 aa11.84□□□□□ -0.51
SKA3-202ENST00000314759 EHFQ9NZC4 300 aa11.84□□□□□ -0.51
SKA3-202ENST00000314759 AMDHD2Q9Y303 409 aa11.84□□□□□ -0.51
SKA3-202ENST00000314759 RTTNQ86VV8 2226 aa11.84□□□□□ -0.51
SKA3-202ENST00000314759 IGKV1-9A0A0C4DH69 117 aa11.84□□□□□ -0.51
SKA3-202ENST00000314759 ZNF878C9JN71 531 aa11.84□□□□□ -0.51
SKA3-202ENST00000314759 GATCO43716 136 aaKnown RBP11.84□□□□□ -0.51
SKA3-202ENST00000314759 FBLP22087 321 aaKnown RBP11.84□□□□□ -0.51
SKA3-202ENST00000314759 SHISA6Q6ZSJ9 500 aa11.84□□□□□ -0.51
SKA3-202ENST00000314759 C7orf61Q8IZ16 206 aa11.84□□□□□ -0.51
SKA3-202ENST00000314759 PNLDC1Q8NA58 520 aaKnown RBP11.84□□□□□ -0.51
SKA3-202ENST00000314759 RHBDD1Q8TEB9 315 aa11.84□□□□□ -0.51
SKA3-202ENST00000314759 SLC25A43Q8WUT9 341 aaPredicted RBP11.84□□□□□ -0.51
SKA3-202ENST00000314759 OR5B2Q96R09 309 aa11.84□□□□□ -0.51
SKA3-202ENST00000314759 GPER1Q99527 375 aa11.84□□□□□ -0.51
SKA3-202ENST00000314759 GGACTQ9BVM4 153 aa11.84□□□□□ -0.51
SKA3-202ENST00000314759 RAB33BQ9H082 229 aa11.84□□□□□ -0.51
SKA3-202ENST00000314759 PARP11Q9NR21 331 aa11.84□□□□□ -0.51
SKA3-202ENST00000314759 CD207Q9UJ71 328 aa11.84□□□□□ -0.51
SKA3-202ENST00000314759 COL5A1P20908 1838 aaPredicted RBP11.84□□□□□ -0.51
SKA3-202ENST00000314759 ASXL3Q9C0F0 2248 aa11.83□□□□□ -0.51
SKA3-202ENST00000314759 FIGNL2A6NMB9 653 aa11.83□□□□□ -0.51
SKA3-202ENST00000314759 EFNA2O43921 213 aa11.83□□□□□ -0.51
SKA3-202ENST00000314759 LY86O95711 162 aa11.83□□□□□ -0.51
SKA3-202ENST00000314759 CST4P01036 141 aa11.83□□□□□ -0.51
SKA3-202ENST00000314759 GIMD1P0DJR0 217 aa11.83□□□□□ -0.51
SKA3-202ENST00000314759 CSNK1EP49674 416 aaKnown RBP11.83□□□□□ -0.51
SKA3-202ENST00000314759 FOXF1Q12946 379 aa11.83□□□□□ -0.51
SKA3-202ENST00000314759 CLEC9AQ6UXN8 241 aa11.83□□□□□ -0.51
SKA3-202ENST00000314759 C1QL2Q7Z5L3 287 aa11.83□□□□□ -0.51
SKA3-202ENST00000314759 FAM89BQ8N5H3 189 aa11.83□□□□□ -0.51
SKA3-202ENST00000314759 OR5D18Q8NGL1 313 aa11.83□□□□□ -0.51
SKA3-202ENST00000314759 THAP3Q8WTV1 239 aaPredicted RBP11.83□□□□□ -0.51
SKA3-202ENST00000314759 TCTEX1D2Q8WW35 142 aa11.83□□□□□ -0.51
SKA3-202ENST00000314759 DDIT4LQ96D03 193 aa11.83□□□□□ -0.51
SKA3-202ENST00000314759 MESP1Q9BRJ9 268 aa11.83□□□□□ -0.51
SKA3-202ENST00000314759 CNTNAP3Q9BZ76 1288 aa11.83□□□□□ -0.51
SKA3-202ENST00000314759 OR10A2Q9H208 303 aa11.83□□□□□ -0.51
SKA3-202ENST00000314759 CHRDQ9H2X0 955 aa11.83□□□□□ -0.51
SKA3-202ENST00000314759 MOB1AQ9H8S9 216 aa11.83□□□□□ -0.51
SKA3-202ENST00000314759 B3GALT5Q9Y2C3 310 aa11.83□□□□□ -0.51
SKA3-202ENST00000314759 POLR1DQ9Y2S0 133 aa11.83□□□□□ -0.51
SKA3-202ENST00000314759 A0A1W2PPE2 198 aa11.83□□□□□ -0.52
SKA3-202ENST00000314759 RER1O15258 196 aa11.83□□□□□ -0.52
SKA3-202ENST00000314759 RPL12P30050 165 aaKnown RBP11.83□□□□□ -0.52
SKA3-202ENST00000314759 STARD6P59095 220 aa11.83□□□□□ -0.52
SKA3-202ENST00000314759 RNF4P78317 190 aa11.83□□□□□ -0.52
SKA3-202ENST00000314759 THEM4Q5T1C6 240 aa11.83□□□□□ -0.52
SKA3-202ENST00000314759 WDSUB1Q8N9V3 476 aa11.83□□□□□ -0.52
SKA3-202ENST00000314759 OR51T1Q8NGJ9 327 aa11.83□□□□□ -0.52
SKA3-202ENST00000314759 SSC4DQ8WTU2 575 aa11.83□□□□□ -0.52
SKA3-202ENST00000314759 ZDHHC12Q96GR4 267 aa11.83□□□□□ -0.52
SKA3-202ENST00000314759 URM1Q9BTM9 101 aaKnown RBP11.83□□□□□ -0.52
SKA3-202ENST00000314759 SPACA1Q9HBV2 294 aa11.83□□□□□ -0.52
SKA3-202ENST00000314759 CLEC1BQ9P126 229 aa11.83□□□□□ -0.52
SKA3-202ENST00000314759 KPTNQ9Y664 436 aa11.83□□□□□ -0.52
SKA3-202ENST00000314759 AP4M1O00189 453 aa11.83□□□□□ -0.52
SKA3-202ENST00000314759 YIF1AO95070 293 aa11.83□□□□□ -0.52
SKA3-202ENST00000314759 PTGER4P35408 488 aa11.83□□□□□ -0.52
SKA3-202ENST00000314759 GLP1RP43220 463 aa11.83□□□□□ -0.52
SKA3-202ENST00000314759 C17orf67Q0P5P2 114 aa11.83□□□□□ -0.52
SKA3-202ENST00000314759 IAH1Q2TAA2 248 aaPredicted RBP11.83□□□□□ -0.52
SKA3-202ENST00000314759 OR2AJ1Q8NGZ0 328 aa11.83□□□□□ -0.52
SKA3-202ENST00000314759 RLN3Q8WXF3 142 aa11.83□□□□□ -0.52
SKA3-202ENST00000314759 EMG1Q92979 244 aaKnown RBP11.83□□□□□ -0.52
SKA3-202ENST00000314759 FBXL17Q9UF56 701 aa11.83□□□□□ -0.52
SKA3-202ENST00000314759 MEMO1Q9Y316 297 aa11.83□□□□□ -0.52
SKA3-202ENST00000314759 E9PLN8 166 aa11.82□□□□□ -0.52
SKA3-202ENST00000314759 K7EPK0 472 aa11.82□□□□□ -0.52
SKA3-202ENST00000314759 NME2P1O60361 137 aa11.82□□□□□ -0.52
SKA3-202ENST00000314759 OPN1LWP04000 364 aa11.82□□□□□ -0.52
SKA3-202ENST00000314759 KLK3P07288 261 aaPredicted RBP11.82□□□□□ -0.52
SKA3-202ENST00000314759 FOSL2P15408 326 aa11.82□□□□□ -0.52
SKA3-202ENST00000314759 NME1P15531 152 aaKnown RBP11.82□□□□□ -0.52
SKA3-202ENST00000314759 TAS2R46P59540 309 aa11.82□□□□□ -0.52
SKA3-202ENST00000314759 DEFB133Q30KQ1 61 aa11.82□□□□□ -0.52
SKA3-202ENST00000314759 CRIP3Q6Q6R5 217 aa11.82□□□□□ -0.52
SKA3-202ENST00000314759 GALNTL5Q7Z4T8 443 aa11.82□□□□□ -0.52
SKA3-202ENST00000314759 FAM71E2Q8N5Q1 922 aa11.82□□□□□ -0.52
SKA3-202ENST00000314759 AKR7LQ8NHP1 331 aa11.82□□□□□ -0.52
SKA3-202ENST00000314759 LYPD6BQ8NI32 183 aa11.82□□□□□ -0.52
SKA3-202ENST00000314759 TAAR9Q96RI9 348 aa11.82□□□□□ -0.52
SKA3-202ENST00000314759 SCRT1Q9BWW7 348 aa11.82□□□□□ -0.52
SKA3-202ENST00000314759 RGCCQ9H4X1 137 aa11.82□□□□□ -0.52
SKA3-202ENST00000314759 ALKBH4Q9NXW9 302 aa11.82□□□□□ -0.52
SKA3-202ENST00000314759 FER1L5A0AVI2 2057 aa11.82□□□□□ -0.52
SKA3-202ENST00000314759 VSTM2BA6NLU5 285 aa11.82□□□□□ -0.52
SKA3-202ENST00000314759 FOXI3A8MTJ6 420 aaPredicted RBP11.82□□□□□ -0.52
SKA3-202ENST00000314759 IFNA2P01563 188 aa11.82□□□□□ -0.52
SKA3-202ENST00000314759 IGLV3-19P01714 112 aa11.82□□□□□ -0.52
SKA3-202ENST00000314759 FCGR2CP31995 323 aa11.82□□□□□ -0.52
SKA3-202ENST00000314759 HTR5AP47898 357 aa11.82□□□□□ -0.52
SKA3-202ENST00000314759 FHITP49789 147 aa11.82□□□□□ -0.52
SKA3-202ENST00000314759 TMEM33P57088 247 aa11.82□□□□□ -0.52
SKA3-202ENST00000314759 CLRN1P58418 232 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms