RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 KHDC3LQ587J8 217 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 DLEU7Q6UYE1 221 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 ZNF793Q6ZN11 406 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 PRSS45Q7RTY3 260 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 OR2A5Q96R48 311 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 TREX1Q9NSU2 369 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 CGGBP1Q9UFW8 167 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 LAMTOR3Q9UHA4 124 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 CNTNAP4Q9C0A0 1308 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 MBLAC1A4D2B0 266 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 ERVV-1B6SEH8 477 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 PMS2P2O95744 297 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 MUC1P15941 1255 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 TBXA2RP21731 343 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 SUSD4Q5VX71 490 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 DCAF4L2Q8NA75 395 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 LGALS14Q8TCE9 139 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 RAB40AQ8WXH6 277 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 BANF2Q9H503 90 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 TMEM160Q9NX00 188 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 CNIH4Q9P003 139 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 VDAC3Q9Y277 283 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 ZNF623O75123 536 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 IL2RAP01589 272 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 OR4A8P0C604 315 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 ORM2P19652 201 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 SRSF2Q01130 221 aaKnown RBP6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 SFXN4Q6P4A7 337 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 RPS27LQ71UM5 84 aaKnown RBP6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 LAX1Q8IWV1 398 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 OR10J6PQ8NGY7 276 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 OR2T10Q8NGZ9 312 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 GATA5Q9BWX5 397 aaPredicted RBP6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 CAMSAP1Q5T5Y3 1602 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 A0A1W2PR80 420 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 TISP43B9A030 160 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 CCL16O15467 120 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 KBTBD11O94819 623 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 SP1P08047 785 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 CD33P20138 364 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 HRH2P25021 359 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 TACR1P25103 407 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 IL1R2P27930 398 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 VGLL4Q14135 290 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 ZNF628Q5EBL2 1059 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 NHLRC3Q5JS37 347 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 HENMT1Q5T8I9 393 aaKnown RBP6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 ASPHD2Q6ICH7 369 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 NANOGP8Q6NSW7 305 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 THOC6Q86W42 341 aaKnown RBP6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 ZNRF1Q8ND25 227 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 PIGTQ969N2 578 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 UPK3BL1B0FP48 263 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 UPK3BL2E5RIL1 263 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 SIRPB1O00241 398 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 FCN3O75636 299 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 NOGQ13253 232 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 SPANXN4Q5MJ08 99 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 PDCD2LQ9BRP1 358 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 NOX4Q9NPH5 578 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 SIRT5Q9NXA8 310 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 FLVCR1Q9Y5Y0 555 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 ZNF609O15014 1411 aa6.9□□□□□ -1.3
LIMCH1-201ENST00000313860 TMEM150BA6NC51 233 aa6.9□□□□□ -1.31
LIMCH1-201ENST00000313860 NPIPB6E9PJ23 425 aa6.9□□□□□ -1.31
LIMCH1-201ENST00000313860 PAGE4O60829 102 aa6.9□□□□□ -1.31
LIMCH1-201ENST00000313860 DDAH2O95865 285 aa6.9□□□□□ -1.31
LIMCH1-201ENST00000313860 TNFP01375 233 aa6.9□□□□□ -1.31
LIMCH1-201ENST00000313860 DDTP30046 118 aa6.9□□□□□ -1.31
LIMCH1-201ENST00000313860 CLDN8P56748 225 aa6.9□□□□□ -1.31
LIMCH1-201ENST00000313860 TMEM33P57088 247 aa6.9□□□□□ -1.31
LIMCH1-201ENST00000313860 USP50Q70EL3 339 aaPredicted RBP6.9□□□□□ -1.31
LIMCH1-201ENST00000313860 IGDCC4Q8TDY8 1250 aa6.9□□□□□ -1.31
LIMCH1-201ENST00000313860 SMOC1Q9H4F8 434 aa6.9□□□□□ -1.31
LIMCH1-201ENST00000313860 FBXO4Q9UKT5 387 aa6.9□□□□□ -1.31
LIMCH1-201ENST00000313860 PKIGQ9Y2B9 76 aa6.9□□□□□ -1.31
LIMCH1-201ENST00000313860 CORINQ9Y5Q5 1042 aa6.9□□□□□ -1.31
LIMCH1-201ENST00000313860 SPATA31A1Q5TZJ5 1347 aa6.9□□□□□ -1.31
LIMCH1-201ENST00000313860 A1L4Q6 167 aa6.9□□□□□ -1.31
LIMCH1-201ENST00000313860 F13BP05160 661 aa6.9□□□□□ -1.31
LIMCH1-201ENST00000313860 C21orf33P30042 268 aaPredicted RBP6.9□□□□□ -1.31
LIMCH1-201ENST00000313860 BACE1P56817 501 aa6.9□□□□□ -1.31
LIMCH1-201ENST00000313860 ARSIQ5FYB1 569 aa6.9□□□□□ -1.31
LIMCH1-201ENST00000313860 LDLRAD2Q5SZI1 272 aa6.9□□□□□ -1.31
LIMCH1-201ENST00000313860 WFDC9Q8NEX5 89 aa6.9□□□□□ -1.31
LIMCH1-201ENST00000313860 OR13H1Q8NG92 308 aa6.9□□□□□ -1.31
LIMCH1-201ENST00000313860 ORAI1Q96D31 301 aa6.9□□□□□ -1.31
LIMCH1-201ENST00000313860 TMEM126AQ9H061 195 aa6.9□□□□□ -1.31
LIMCH1-201ENST00000313860 AURKAIP1Q9NWT8 199 aaPredicted RBP6.9□□□□□ -1.31
LIMCH1-201ENST00000313860 CLEC18AA5D8T8 446 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 HEPACAM2A8MVW5 462 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 B4GALT3O60512 393 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 FCMRO60667 390 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 LDB3O75112 727 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 PTGER3P43115 390 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 SLC25A52Q3SY17 297 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 SOWAHCQ53LP3 525 aaPredicted RBP6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 FRMPD2BQ6IN97 320 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 RPL22L1Q6P5R6 122 aaKnown RBP6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 CLEC18CQ8NCF0 446 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms