RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 LPAR3Q9UBY5 353 aa15.57■□□□□ 0.08
SYNPO-201ENST00000307662 MASP2O00187 686 aa15.57■□□□□ 0.08
SYNPO-201ENST00000307662 ABI3BPQ7Z7G0 1075 aa15.57■□□□□ 0.08
SYNPO-201ENST00000307662 BCL7CQ8WUZ0 217 aaPredicted RBP15.57■□□□□ 0.08
SYNPO-201ENST00000307662 TECTBQ96PL2 329 aa15.57■□□□□ 0.08
SYNPO-201ENST00000307662 FBXL17Q9UF56 701 aa15.57■□□□□ 0.08
SYNPO-201ENST00000307662 C8orf82Q6P1X6 216 aaPredicted RBP15.57■□□□□ 0.08
SYNPO-201ENST00000307662 CBLN2Q8IUK8 224 aa15.57■□□□□ 0.08
SYNPO-201ENST00000307662 ETFBKMTQ8IXQ9 262 aa15.57■□□□□ 0.08
SYNPO-201ENST00000307662 M1APQ8TC57 530 aa15.57■□□□□ 0.08
SYNPO-201ENST00000307662 MMP25Q9NPA2 562 aa15.57■□□□□ 0.08
SYNPO-201ENST00000307662 INHBBP09529 407 aa15.56■□□□□ 0.08
SYNPO-201ENST00000307662 LGALSLQ3ZCW2 172 aaPredicted RBP15.56■□□□□ 0.08
SYNPO-201ENST00000307662 AWAT1Q58HT5 328 aa15.56■□□□□ 0.08
SYNPO-201ENST00000307662 NOL4LQ96MY1 436 aaPredicted RBP15.56■□□□□ 0.08
SYNPO-201ENST00000307662 TAAR9Q96RI9 348 aa15.56■□□□□ 0.08
SYNPO-201ENST00000307662 DHHO43323 396 aa15.56■□□□□ 0.08
SYNPO-201ENST00000307662 ERHP84090 104 aaKnown RBP15.56■□□□□ 0.08
SYNPO-201ENST00000307662 NCMAPQ5T1S8 102 aa15.56■□□□□ 0.08
SYNPO-201ENST00000307662 TCTEX1D1Q8N7M0 179 aa15.56■□□□□ 0.08
SYNPO-201ENST00000307662 NHLRC2Q8NBF2 726 aa15.56■□□□□ 0.08
SYNPO-201ENST00000307662 TMEM178AQ8NBL3 297 aa15.56■□□□□ 0.08
SYNPO-201ENST00000307662 PRDM7Q9NQW5 492 aa15.56■□□□□ 0.08
SYNPO-201ENST00000307662 ARID1BQ8NFD5 2236 aaPredicted RBP15.56■□□□□ 0.08
SYNPO-201ENST00000307662 A0A1W2PNV4 684 aa15.56■□□□□ 0.08
SYNPO-201ENST00000307662 NDUFB7P17568 137 aa15.56■□□□□ 0.08
SYNPO-201ENST00000307662 IL13RA2Q14627 380 aa15.56■□□□□ 0.08
SYNPO-201ENST00000307662 OR5C1Q8NGR4 320 aa15.56■□□□□ 0.08
SYNPO-201ENST00000307662 FUT3P21217 361 aa15.56■□□□□ 0.08
SYNPO-201ENST00000307662 CD27P26842 260 aa15.56■□□□□ 0.08
SYNPO-201ENST00000307662 TSEN54Q7Z6J9 526 aaKnown RBP15.56■□□□□ 0.08
SYNPO-201ENST00000307662 RASL12Q9NYN1 266 aa15.56■□□□□ 0.08
SYNPO-201ENST00000307662 A0A087X0M5 115 aa15.55■□□□□ 0.08
SYNPO-201ENST00000307662 A0A1B0GX30 115 aa15.55■□□□□ 0.08
SYNPO-201ENST00000307662 M0R143 59 aa15.55■□□□□ 0.08
SYNPO-201ENST00000307662 PLA2G10O15496 165 aa15.55■□□□□ 0.08
SYNPO-201ENST00000307662 HLA-DRB3P79483 266 aa15.55■□□□□ 0.08
SYNPO-201ENST00000307662 DMWDQ09019 674 aa15.55■□□□□ 0.08
SYNPO-201ENST00000307662 DMRTC1Q5HYR2 192 aa15.55■□□□□ 0.08
SYNPO-201ENST00000307662 ETFRF1Q6IPR1 90 aa15.55■□□□□ 0.08
SYNPO-201ENST00000307662 FAHD2BQ6P2I3 314 aaPredicted RBP15.55■□□□□ 0.08
SYNPO-201ENST00000307662 FAHD2AQ96GK7 314 aa15.55■□□□□ 0.08
SYNPO-201ENST00000307662 FER1L6-AS2Q96M78 137 aa15.55■□□□□ 0.08
SYNPO-201ENST00000307662 TMEM267Q0VDI3 215 aaPredicted RBP15.55■□□□□ 0.08
SYNPO-201ENST00000307662 OR10G3Q8NGC4 313 aa15.55■□□□□ 0.08
SYNPO-201ENST00000307662 EXTL1Q92935 676 aa15.55■□□□□ 0.08
SYNPO-201ENST00000307662 S1PR3Q99500 378 aa15.55■□□□□ 0.08
SYNPO-201ENST00000307662 LOXHD1Q8IVV2 1947 aa15.55■□□□□ 0.08
SYNPO-201ENST00000307662 SEMG1P04279 462 aa15.55■□□□□ 0.08
SYNPO-201ENST00000307662 SUMO3P55854 103 aaPredicted RBP15.55■□□□□ 0.08
SYNPO-201ENST00000307662 NTMQ9P121 344 aa15.55■□□□□ 0.08
SYNPO-201ENST00000307662 DOCK2Q92608 1830 aa15.55■□□□□ 0.08
SYNPO-201ENST00000307662 RRADP55042 308 aa15.55■□□□□ 0.08
SYNPO-201ENST00000307662 CLDN15P56746 228 aa15.55■□□□□ 0.08
SYNPO-201ENST00000307662 ZNF816Q0VGE8 651 aaPredicted RBP15.55■□□□□ 0.08
SYNPO-201ENST00000307662 MOB1BQ7L9L4 216 aa15.55■□□□□ 0.08
SYNPO-201ENST00000307662 ZNF687Q8N1G0 1237 aa15.55■□□□□ 0.08
SYNPO-201ENST00000307662 SPSB1Q96BD6 273 aa15.55■□□□□ 0.08
SYNPO-201ENST00000307662 MVB12AQ96EY5 273 aa15.55■□□□□ 0.08
SYNPO-201ENST00000307662 PIK3IP1Q96FE7 263 aa15.55■□□□□ 0.08
SYNPO-201ENST00000307662 RAB40CQ96S21 281 aa15.55■□□□□ 0.08
SYNPO-201ENST00000307662 MAP1LC3B2A6NCE7 125 aa15.54■□□□□ 0.08
SYNPO-201ENST00000307662 FAM53BQ14153 422 aa15.54■□□□□ 0.08
SYNPO-201ENST00000307662 DMKNQ6E0U4 476 aaPredicted RBP15.54■□□□□ 0.08
SYNPO-201ENST00000307662 COMMD5Q9GZQ3 224 aa15.54■□□□□ 0.08
SYNPO-201ENST00000307662 MAP1LC3BQ9GZQ8 125 aa15.54■□□□□ 0.08
SYNPO-201ENST00000307662 PPM1DO15297 605 aa15.54■□□□□ 0.08
SYNPO-201ENST00000307662 ADAM20O43506 726 aa15.54■□□□□ 0.08
SYNPO-201ENST00000307662 CXCL10P02778 98 aa15.54■□□□□ 0.08
SYNPO-201ENST00000307662 CDAP32320 146 aa15.54■□□□□ 0.08
SYNPO-201ENST00000307662 LIMK1P53667 647 aa15.54■□□□□ 0.08
SYNPO-201ENST00000307662 FOXF1Q12946 379 aa15.54■□□□□ 0.08
SYNPO-201ENST00000307662 HES1Q14469 280 aa15.54■□□□□ 0.08
SYNPO-201ENST00000307662 ELSPBP1Q96BH3 223 aa15.54■□□□□ 0.08
SYNPO-201ENST00000307662 SIRT3Q9NTG7 399 aaPredicted RBP15.54■□□□□ 0.08
SYNPO-201ENST00000307662 LOC102723971A0A1B0GUV8 181 aa15.54■□□□□ 0.08
SYNPO-201ENST00000307662 RFC3P40938 356 aa15.54■□□□□ 0.08
SYNPO-201ENST00000307662 HDGFL3Q9Y3E1 203 aa15.54■□□□□ 0.08
SYNPO-201ENST00000307662 CCL4L1Q8NHW4 92 aa15.54■□□□□ 0.08
SYNPO-201ENST00000307662 KCNE4Q8WWG9 221 aa15.54■□□□□ 0.08
SYNPO-201ENST00000307662 NAT8BQ9UHF3 227 aa15.54■□□□□ 0.08
SYNPO-201ENST00000307662 NKX2-2O95096 273 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 CCKARP32238 428 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 FFAR4Q5NUL3 377 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 NAA60Q9H7X0 242 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 IGLV3-16A0A075B6K0 115 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 RBFOX3A6NFN3 312 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 COX7A2P2O60397 106 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 OPN1MWP04001 364 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 OPN1MW2P0DN77 364 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 OPN1MW3P0DN78 364 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 EDARADDQ8WWZ3 215 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 EVPLQ92817 2033 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 FAM166BA8MTA8 275 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 GPR37O15354 613 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 CEACAM5P06731 702 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 ZBTB25P24278 435 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 FBXL14Q8N1E6 418 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 OR2C3Q8N628 320 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 NPAS1Q99742 590 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms