RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 ZNF239Q16600 458 aaKnown RBP17.15■□□□□ 0.34
UPF1-201ENST00000262803 ADAM5Q6NVV9 412 aa17.15■□□□□ 0.34
UPF1-201ENST00000262803 OR10Z1Q8NGY1 313 aa17.15■□□□□ 0.34
UPF1-201ENST00000262803 OR4F5Q8NH21 305 aa17.15■□□□□ 0.34
UPF1-201ENST00000262803 RAB1CQ92928 201 aa17.15■□□□□ 0.34
UPF1-201ENST00000262803 NTNG2Q96CW9 530 aa17.15■□□□□ 0.34
UPF1-201ENST00000262803 FBXO17Q96EF6 278 aa17.15■□□□□ 0.34
UPF1-201ENST00000262803 OR4F4Q96R69 305 aa17.15■□□□□ 0.34
UPF1-201ENST00000262803 RBM38Q9H0Z9 239 aaKnown RBP17.15■□□□□ 0.34
UPF1-201ENST00000262803 C21orf140B9A014 251 aa17.15■□□□□ 0.34
UPF1-201ENST00000262803 FGF2P09038 288 aa17.15■□□□□ 0.34
UPF1-201ENST00000262803 ACER2Q5QJU3 275 aa17.15■□□□□ 0.34
UPF1-201ENST00000262803 BTNL3Q6UXE8 466 aa17.15■□□□□ 0.34
UPF1-201ENST00000262803 CA5BP1Q8WTZ4 195 aa17.15■□□□□ 0.34
UPF1-201ENST00000262803 FBXO34Q9NWN3 711 aa17.15■□□□□ 0.34
UPF1-201ENST00000262803 FER1L6Q2WGJ9 1857 aa17.14■□□□□ 0.34
UPF1-201ENST00000262803 AQP7P3A6NL99 342 aa17.14■□□□□ 0.33
UPF1-201ENST00000262803 PIGPP57054 158 aa17.14■□□□□ 0.33
UPF1-201ENST00000262803 PDZK1IP1Q13113 114 aa17.14■□□□□ 0.33
UPF1-201ENST00000262803 GPNMBQ14956 572 aa17.14■□□□□ 0.33
UPF1-201ENST00000262803 MOB3BQ86TA1 216 aa17.14■□□□□ 0.33
UPF1-201ENST00000262803 AMER3Q8N944 861 aa17.14■□□□□ 0.33
UPF1-201ENST00000262803 MTCH2Q9Y6C9 303 aa17.14■□□□□ 0.33
UPF1-201ENST00000262803 OR2B8PP59922 312 aa17.14■□□□□ 0.33
UPF1-201ENST00000262803 OR4S1Q8NGB4 309 aa17.14■□□□□ 0.33
UPF1-201ENST00000262803 ZNRF4Q8WWF5 429 aa17.14■□□□□ 0.33
UPF1-201ENST00000262803 EXTL1Q92935 676 aa17.14■□□□□ 0.33
UPF1-201ENST00000262803 WDR61Q9GZS3 305 aaKnown RBP17.14■□□□□ 0.33
UPF1-201ENST00000262803 CA10Q9NS85 328 aa17.14■□□□□ 0.33
UPF1-201ENST00000262803 PAPPAQ13219 1627 aa17.14■□□□□ 0.33
UPF1-201ENST00000262803 hADV38S2A0JD32 116 aa17.14■□□□□ 0.33
UPF1-201ENST00000262803 NME2P1O60361 137 aa17.14■□□□□ 0.33
UPF1-201ENST00000262803 CD80P33681 288 aa17.14■□□□□ 0.33
UPF1-201ENST00000262803 NDUFA6P56556 154 aa17.14■□□□□ 0.33
UPF1-201ENST00000262803 LINC00303Q3SY05 128 aa17.14■□□□□ 0.33
UPF1-201ENST00000262803 ST8SIA4Q92187 359 aa17.14■□□□□ 0.33
UPF1-201ENST00000262803 VN1R1Q9GZP7 353 aa17.14■□□□□ 0.33
UPF1-201ENST00000262803 TAAR3PQ9P1P4 343 aa17.14■□□□□ 0.33
UPF1-201ENST00000262803 FAM221AA4D161 298 aa17.14■□□□□ 0.33
UPF1-201ENST00000262803 OR5B21A6NL26 309 aa17.14■□□□□ 0.33
UPF1-201ENST00000262803 ADRB1P08588 477 aa17.14■□□□□ 0.33
UPF1-201ENST00000262803 SCN1AP35498 2009 aa17.14■□□□□ 0.33
UPF1-201ENST00000262803 TRIP6Q15654 476 aaKnown RBP17.14■□□□□ 0.33
UPF1-201ENST00000262803 ZDHHC22Q8N966 263 aa17.14■□□□□ 0.33
UPF1-201ENST00000262803 OR52N4Q8NGI2 321 aa17.14■□□□□ 0.33
UPF1-201ENST00000262803 ERGIC1Q969X5 290 aa17.14■□□□□ 0.33
UPF1-201ENST00000262803 CLDN23Q96B33 292 aa17.14■□□□□ 0.33
UPF1-201ENST00000262803 MMP25Q9NPA2 562 aa17.14■□□□□ 0.33
UPF1-201ENST00000262803 URGCP-MRPS24S4R325 110 aa17.14■□□□□ 0.33
UPF1-201ENST00000262803 PGA3P0DJD8 388 aa17.13■□□□□ 0.33
UPF1-201ENST00000262803 SLC25A6P12236 298 aa17.13■□□□□ 0.33
UPF1-201ENST00000262803 FPR2P25090 351 aa17.13■□□□□ 0.33
UPF1-201ENST00000262803 UBAC2Q8NBM4 344 aa17.13■□□□□ 0.33
UPF1-201ENST00000262803 NUBPLQ8TB37 319 aa17.13■□□□□ 0.33
UPF1-201ENST00000262803 GPR119Q8TDV5 335 aa17.13■□□□□ 0.33
UPF1-201ENST00000262803 RPEQ96AT9 228 aa17.13■□□□□ 0.33
UPF1-201ENST00000262803 ZNF727A8MUV8 499 aa17.13■□□□□ 0.33
UPF1-201ENST00000262803 GP1BAP07359 652 aa17.13■□□□□ 0.33
UPF1-201ENST00000262803 ANKRD34CP0C6C1 535 aa17.13■□□□□ 0.33
UPF1-201ENST00000262803 IGHV3-15A0A0B4J1V0 119 aa17.13■□□□□ 0.33
UPF1-201ENST00000262803 CRYBB2P43320 205 aa17.13■□□□□ 0.33
UPF1-201ENST00000262803 HMGA2P52926 109 aa17.13■□□□□ 0.33
UPF1-201ENST00000262803 BAMBIQ13145 260 aa17.13■□□□□ 0.33
UPF1-201ENST00000262803 OR52B4Q8NGK2 314 aa17.13■□□□□ 0.33
UPF1-201ENST00000262803 CLEC18AA5D8T8 446 aa17.13■□□□□ 0.33
UPF1-201ENST00000262803 PRSS44E7EML9 344 aa17.13■□□□□ 0.33
UPF1-201ENST00000262803 B3GALNT1O75752 331 aa17.13■□□□□ 0.33
UPF1-201ENST00000262803 CISD3P0C7P0 127 aa17.13■□□□□ 0.33
UPF1-201ENST00000262803 SLC16A12Q6ZSM3 486 aa17.13■□□□□ 0.33
UPF1-201ENST00000262803 CLEC18CQ8NCF0 446 aa17.13■□□□□ 0.33
UPF1-201ENST00000262803 ZNF707Q96C28 371 aaPredicted RBP17.13■□□□□ 0.33
UPF1-201ENST00000262803 SF3B5Q9BWJ5 86 aaKnown RBP17.13■□□□□ 0.33
UPF1-201ENST00000262803 GOLT1BQ9Y3E0 138 aa17.13■□□□□ 0.33
UPF1-201ENST00000262803 IL5P05113 134 aa17.12■□□□□ 0.33
UPF1-201ENST00000262803 H3F3AP84243 136 aa17.12■□□□□ 0.33
UPF1-201ENST00000262803 KTI12Q96EK9 354 aaPredicted RBP17.12■□□□□ 0.33
UPF1-201ENST00000262803 UCK1Q9HA47 277 aa17.12■□□□□ 0.33
UPF1-201ENST00000262803 PLEKHB1Q9UF11 243 aaPredicted RBP17.12■□□□□ 0.33
UPF1-201ENST00000262803 IGHV1OR15-9A0A0B4J2B8 117 aa17.12■□□□□ 0.33
UPF1-201ENST00000262803 DHRS3O75911 302 aa17.12■□□□□ 0.33
UPF1-201ENST00000262803 PCBP4P57723 403 aaKnown RBP17.12■□□□□ 0.33
UPF1-201ENST00000262803 LINC01555Q8NAE3 123 aa17.12■□□□□ 0.33
UPF1-201ENST00000262803 ADPRHL1Q8NDY3 354 aa17.12■□□□□ 0.33
UPF1-201ENST00000262803 C20orf141Q9NUB4 165 aa17.12■□□□□ 0.33
UPF1-201ENST00000262803 SERGEFQ9UGK8 458 aa17.12■□□□□ 0.33
UPF1-201ENST00000262803 GOSR1O95249 250 aa17.12■□□□□ 0.33
UPF1-201ENST00000262803 ACTL6AO96019 429 aa17.12■□□□□ 0.33
UPF1-201ENST00000262803 SPEM2Q0P670 501 aa17.12■□□□□ 0.33
UPF1-201ENST00000262803 OR5I1Q13606 314 aa17.12■□□□□ 0.33
UPF1-201ENST00000262803 SSX1Q16384 188 aa17.12■□□□□ 0.33
UPF1-201ENST00000262803 TMEM128Q5BJH2 165 aa17.12■□□□□ 0.33
UPF1-201ENST00000262803 BAP18Q8IXM2 172 aa17.12■□□□□ 0.33
UPF1-201ENST00000262803 OR1L3Q8NH93 324 aa17.12■□□□□ 0.33
UPF1-201ENST00000262803 SAT2Q96F10 170 aaPredicted RBP17.12■□□□□ 0.33
UPF1-201ENST00000262803 MPC1Q9Y5U8 109 aa17.12■□□□□ 0.33
UPF1-201ENST00000262803 A0A1W2PN81 502 aa17.12■□□□□ 0.33
UPF1-201ENST00000262803 CHRNA7P36544 502 aa17.12■□□□□ 0.33
UPF1-201ENST00000262803 WIPI1Q5MNZ9 446 aaPredicted RBP17.12■□□□□ 0.33
UPF1-201ENST00000262803 GUSBP11Q6P575 273 aa17.12■□□□□ 0.33
UPF1-201ENST00000262803 ZG16BQ96DA0 208 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms