RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 WDYHV1Q96HA8 205 aa7.55□□□□□ -1.2
VPS4B-201ENST00000238497 CLEC4MQ9H2X3 399 aaPredicted RBP7.55□□□□□ -1.2
VPS4B-201ENST00000238497 GPR173Q9NS66 373 aa7.55□□□□□ -1.2
VPS4B-201ENST00000238497 CYB5R1Q9UHQ9 305 aa7.55□□□□□ -1.2
VPS4B-201ENST00000238497 ZNF230Q9UIE0 474 aaPredicted RBP7.55□□□□□ -1.2
VPS4B-201ENST00000238497 CADP27708 2225 aa7.55□□□□□ -1.2
VPS4B-201ENST00000238497 NAV3Q8IVL0 2385 aa7.55□□□□□ -1.2
VPS4B-201ENST00000238497 DHHO43323 396 aa7.55□□□□□ -1.2
VPS4B-201ENST00000238497 ACTL6AO96019 429 aa7.55□□□□□ -1.2
VPS4B-201ENST00000238497 PTBP1P26599 531 aaKnown RBP eCLIP7.55□□□□□ -1.2
VPS4B-201ENST00000238497 HTR5AP47898 357 aa7.55□□□□□ -1.2
VPS4B-201ENST00000238497 CSNK2A1P68400 391 aaPredicted RBP7.55□□□□□ -1.2
VPS4B-201ENST00000238497 BAMBIQ13145 260 aa7.55□□□□□ -1.2
VPS4B-201ENST00000238497 TNK1Q13470 666 aa7.55□□□□□ -1.2
VPS4B-201ENST00000238497 POU4F3Q15319 338 aa7.55□□□□□ -1.2
VPS4B-201ENST00000238497 OR9K2Q8NGE7 335 aa7.55□□□□□ -1.2
VPS4B-201ENST00000238497 OR51T1Q8NGJ9 327 aa7.55□□□□□ -1.2
VPS4B-201ENST00000238497 OR10D3Q8NH80 312 aa7.55□□□□□ -1.2
VPS4B-201ENST00000238497 RNF133Q8WVZ7 376 aa7.55□□□□□ -1.2
VPS4B-201ENST00000238497 SORCS2Q96PQ0 1159 aa7.55□□□□□ -1.2
VPS4B-201ENST00000238497 SNX18Q96RF0 628 aa7.55□□□□□ -1.2
VPS4B-201ENST00000238497 GPN1Q9HCN4 374 aaPredicted RBP7.55□□□□□ -1.2
VPS4B-201ENST00000238497 CA10Q9NS85 328 aa7.55□□□□□ -1.2
VPS4B-201ENST00000238497 ZNF275Q9NSD4 429 aaPredicted RBP7.55□□□□□ -1.2
VPS4B-201ENST00000238497 NPAP1Q9NZP6 1156 aa7.55□□□□□ -1.2
VPS4B-201ENST00000238497 SLC23A1Q9UHI7 598 aa7.55□□□□□ -1.2
VPS4B-201ENST00000238497 PIGLQ9Y2B2 252 aa7.55□□□□□ -1.2
VPS4B-201ENST00000238497 MRPS28Q9Y2Q9 187 aaKnown RBP7.55□□□□□ -1.2
VPS4B-201ENST00000238497 A0A1W2PR80 420 aa7.54□□□□□ -1.2
VPS4B-201ENST00000238497 FAM157BP0CG42 384 aa7.54□□□□□ -1.2
VPS4B-201ENST00000238497 UBCP0CG48 685 aaKnown RBP7.54□□□□□ -1.2
VPS4B-201ENST00000238497 CD79AP11912 226 aa7.54□□□□□ -1.2
VPS4B-201ENST00000238497 CEACAM16Q2WEN9 425 aa7.54□□□□□ -1.2
VPS4B-201ENST00000238497 RNASE10Q5GAN6 216 aaKnown RBP7.54□□□□□ -1.2
VPS4B-201ENST00000238497 ANKRD16Q6P6B7 361 aa7.54□□□□□ -1.2
VPS4B-201ENST00000238497 CREB3L2Q70SY1 520 aa7.54□□□□□ -1.2
VPS4B-201ENST00000238497 C9orf106Q8NAJ2 232 aa7.54□□□□□ -1.2
VPS4B-201ENST00000238497 OR6M1Q8NGM8 313 aa7.54□□□□□ -1.2
VPS4B-201ENST00000238497 C1QTNF6Q9BXI9 259 aa7.54□□□□□ -1.2
VPS4B-201ENST00000238497 PRR13Q9NZ81 148 aa7.54□□□□□ -1.2
VPS4B-201ENST00000238497 HDGFL3Q9Y3E1 203 aa7.54□□□□□ -1.2
VPS4B-201ENST00000238497 TRBV5-7A0A0A0MS05 114 aa7.54□□□□□ -1.2
VPS4B-201ENST00000238497 SLC22A5O76082 557 aa7.54□□□□□ -1.2
VPS4B-201ENST00000238497 AKAIN1P0CW23 69 aa7.54□□□□□ -1.2
VPS4B-201ENST00000238497 PGAM2P15259 253 aa7.54□□□□□ -1.2
VPS4B-201ENST00000238497 MSR1P21757 451 aa7.54□□□□□ -1.2
VPS4B-201ENST00000238497 ACHEP22303 614 aa7.54□□□□□ -1.2
VPS4B-201ENST00000238497 SUCLG1P53597 346 aaKnown RBP7.54□□□□□ -1.2
VPS4B-201ENST00000238497 TEX30Q5JUR7 227 aa7.54□□□□□ -1.2
VPS4B-201ENST00000238497 SLC16A14Q7RTX9 510 aa7.54□□□□□ -1.2
VPS4B-201ENST00000238497 ADGRE4PQ86SQ3 457 aa7.54□□□□□ -1.2
VPS4B-201ENST00000238497 SLC25A43Q8WUT9 341 aaPredicted RBP7.54□□□□□ -1.2
VPS4B-201ENST00000238497 PIGCQ92535 297 aa7.54□□□□□ -1.2
VPS4B-201ENST00000238497 ELMOD3Q96FG2 381 aa7.54□□□□□ -1.2
VPS4B-201ENST00000238497 HYLS1Q96M11 299 aa7.54□□□□□ -1.2
VPS4B-201ENST00000238497 NPDC1Q9NQX5 325 aaPredicted RBP7.54□□□□□ -1.2
VPS4B-201ENST00000238497 NCKAP5O14513 1909 aa7.54□□□□□ -1.2
VPS4B-201ENST00000238497 MEGF11A6BM72 1044 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 AQP7P3A6NL99 342 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 M0R135 149 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 HSPB6O14558 160 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 SOCS1O15524 211 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 SPRY1O43609 319 aaPredicted RBP7.53□□□□□ -1.2
VPS4B-201ENST00000238497 OR3A3P47888 321 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 OR3A2P47893 321 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 ROM1Q03395 351 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 RIPPLY2Q5TAB7 128 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 BAIAP2L2Q6UXY1 529 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 GABRG1Q8N1C3 465 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 FNDC9Q8TBE3 224 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 ZNF799Q96GE5 643 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 GHITMQ9H3K2 345 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 POFUT1Q9H488 388 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 ANKRD20A5PA0PJZ0 165 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 SLC22A20A6NK97 555 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 C1QBP02746 253 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 CSTBP04080 98 aaKnown RBP7.53□□□□□ -1.2
VPS4B-201ENST00000238497 ZNF35P13682 527 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 KRTAP10-9P60411 292 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 FOXF2Q12947 444 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 RIN1Q13671 783 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 ZNF813Q6ZN06 617 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 SEM1Q6ZVN7 128 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 IQCF2Q8IXL9 164 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 GTPBP8Q8N3Z3 284 aaPredicted RBP7.53□□□□□ -1.2
VPS4B-201ENST00000238497 SLC22A24Q8N4F4 322 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 GJC3Q8NFK1 279 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 OR6X1Q8NH79 312 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 ZBTB8AQ96BR9 441 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 OR2M2Q96R28 347 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 RYDENQ9NUL5 291 aaKnown RBP7.53□□□□□ -1.2
VPS4B-201ENST00000238497 COPZ2Q9P299 210 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 ETV7Q9Y603 341 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 PRRC2AP48634 2157 aaKnown RBP7.53□□□□□ -1.2
VPS4B-201ENST00000238497 C5orf51A6NDU8 294 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 H7C417 338 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 KCNAB3O43448 404 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 SGCEO43556 437 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 MRPL33O75394 65 aaKnown RBP7.53□□□□□ -1.2
VPS4B-201ENST00000238497 KNG1P01042 644 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms