RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 GLB1P16278 677 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 PITX1P78337 314 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-220ENST00000641603 C18orf21Q32NC0 220 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-220ENST00000641603 LAMTOR1Q6IAA8 161 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 PAQR6Q6TCH4 344 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 LCN15Q6UWW0 184 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 DHRS13Q6UX07 377 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 CARFQ8N187 725 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 SIRT6Q8N6T7 355 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 TMEM217Q8N7C4 229 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 PNPLA1Q8N8W4 532 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 OR52N5Q8NH56 324 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 RTL8AQ9BWD3 113 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 TAAR2Q9P1P5 351 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 TRAPPC2LQ9UL33 140 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 ARL2-SNX15V9GYD0 113 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 F5H5K5 113 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 XRCC2O43543 280 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 NTF3P20783 257 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 IL2RGP31785 369 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 TGFBR1P36897 503 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 SGCBQ16585 318 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 COX20Q5RI15 118 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 TTC9BQ8N6N2 239 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 BARHL1Q9BZE3 327 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 A0A1B0GWJ7 208 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 ZNF253O75346 499 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 DANCRP0C864 163 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 WNT3P56703 355 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 GABREP78334 506 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 JOSD1Q15040 202 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-220ENST00000641603 MRGPRX4Q96LA9 322 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 HBZP02008 142 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 TCN2P20062 427 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 TMEM268Q5VZI3 342 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 ABHD17CQ6PCB6 329 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 CYHR1Q6ZMK1 362 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 LANCL3Q6ZV70 420 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 Q8IYB0 196 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 OR2A1Q8NGT9 310 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 ORAOV1Q8WV07 137 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 TMEM255BQ8WV15 326 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 CREBZFQ9NS37 354 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 TNFRSF10CO14798 259 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 APOBEC1P41238 236 aaKnown RBP4.21□□□□□ -1.74
SCN1A-220ENST00000641603 UBE2NP61088 152 aaKnown RBP4.21□□□□□ -1.74
SCN1A-220ENST00000641603 RAC1P63000 192 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 GGTLC2Q14390 218 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 ZNF638Q14966 1978 aaKnown RBP4.21□□□□□ -1.74
SCN1A-220ENST00000641603 HERPUD1Q15011 391 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 OR52B4Q8NGK2 314 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 C4orf45Q96LM5 186 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 OR2A5Q96R48 311 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 SOX21Q9Y651 276 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-220ENST00000641603 SPINT2O43291 252 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 ZNF737O75373 536 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 PFN3P60673 137 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 LINC01559Q495D7 138 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 ZNF506Q5JVG8 444 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 TRNP1Q6NT89 227 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 FAM71F1Q96KD3 344 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-220ENST00000641603 PSMG3Q9BT73 122 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-220ENST00000641603 MBLAC1A4D2B0 266 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-220ENST00000641603 FBLP22087 321 aaKnown RBP4.2□□□□□ -1.74
SCN1A-220ENST00000641603 RPS20P60866 119 aaKnown RBP4.2□□□□□ -1.74
SCN1A-220ENST00000641603 PYCR3Q53H96 274 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 OR8G2PQ6IF36 304 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 OR52N4Q8NGI2 321 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 OTOSQ8NHW6 89 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 EDARADDQ8WWZ3 215 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 SLC35E1Q96K37 410 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 RAB33BQ9H082 229 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 SLC23A2Q9UGH3 650 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 EMC9Q9Y3B6 208 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 OR51B4Q9Y5P0 310 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 SIPA1L2Q9P2F8 1722 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-220ENST00000641603 CCDC163A0A0D9SF12 145 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 COCHO43405 550 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 IGLV3-25P01717 112 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 GJA4P35212 333 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 KIR2DS2P43631 304 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 P2RY4P51582 365 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 RAB32Q13637 225 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 PLCXD3Q63HM9 321 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 H2BFWTQ7Z2G1 175 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 OR8B4Q96RC9 309 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 TLNRD1Q9H1K6 362 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 TXNIPQ9H3M7 391 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 PSENENQ9NZ42 101 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 KCNMB2Q9Y691 235 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 LILRB3O75022 631 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 IGF2P01344 180 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 SELEP16581 610 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 HOXA11P31270 313 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-220ENST00000641603 TGFBR3Q03167 851 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 TNFRSF9Q07011 255 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 YOD1Q5VVQ6 348 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-220ENST00000641603 HTR3DQ70Z44 454 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 SAMD7Q7Z3H4 446 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 ZNF573Q86YE8 665 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms