RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 SLC18A1P54219 525 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 RRN3P1Q2M238 152 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 ATPAF1Q5TC12 328 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-218ENST00000640036 STUMQ69YW2 141 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 OR8J2Q8NGG1 315 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 OR52L2PQ8NGH6 319 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 GIMAP1Q8WWP7 306 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 ANAPC16Q96DE5 110 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 MEIS3P1A6NDR6 274 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 TMEM212A6NML5 194 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 TIMM23O14925 209 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 DFFBO76075 338 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 OPN1MWP04001 364 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 IL5P05113 134 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 RPS17P08708 135 aaKnown RBP4.48□□□□□ -1.69
SCN1A-218ENST00000640036 UBBP0CG47 229 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 OPN1MW2P0DN77 364 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 OPN1MW3P0DN78 364 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 CCL3P10147 92 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 HTR6P50406 440 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF133P52736 654 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-218ENST00000640036 TAS2R45P59539 299 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 RPS27AP62979 156 aaKnown RBP4.48□□□□□ -1.69
SCN1A-218ENST00000640036 UBA52P62987 128 aaKnown RBP4.48□□□□□ -1.69
SCN1A-218ENST00000640036 DOC2BQ14184 412 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF239Q16600 458 aaKnown RBP4.48□□□□□ -1.69
SCN1A-218ENST00000640036 ELFN2Q5R3F8 820 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 FBXW12Q6X9E4 464 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 EIF4E3Q8N5X7 224 aaKnown RBP4.48□□□□□ -1.69
SCN1A-218ENST00000640036 TMEM99Q8N816 258 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 OR2T11Q8NH01 316 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 OR1F12Q8NHA8 337 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 TFAP2CQ92754 450 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 PTP4A1Q93096 173 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 VPS25Q9BRG1 176 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 OR2J1Q9GZK6 312 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 PLEKHF2Q9H8W4 249 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 COA3Q9Y2R0 106 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-218ENST00000640036 RNF114Q9Y508 228 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 SERPINE3A8MV23 424 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 A8MV72 311 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-218ENST00000640036 TO15178 435 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 DENRO43583 198 aaKnown RBP4.48□□□□□ -1.69
SCN1A-218ENST00000640036 CASP3P42574 277 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 PCLAFQ15004 111 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 GTDC1Q4AE62 458 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 PRAMEF5Q5TYX0 476 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 PRAMEF6Q5VXH4 476 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 SFRP4Q6FHJ7 346 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-218ENST00000640036 TRAT1Q6PIZ9 186 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 FAM58AQ8N1B3 248 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 ARIH2OSQ8N7S6 290 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 AKR7LQ8NHP1 331 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 ANGPTL6Q8NI99 470 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 GALMQ96C23 342 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 SIGLEC12Q96PQ1 595 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 SF3B5Q9BWJ5 86 aaKnown RBP4.48□□□□□ -1.69
SCN1A-218ENST00000640036 HRH4Q9H3N8 390 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF665Q9H7R5 613 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 MED19A0JLT2 244 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-218ENST00000640036 OR2W5A6NFC9 320 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 SCGB1C2P0DMR2 95 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 OSMP13725 252 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 CD33P20138 364 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 TNFSF10P50591 281 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF74Q16587 644 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 KRBOX4Q5JUW0 171 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 SFRP5Q5T4F7 317 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 SLC25A42Q86VD7 318 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 TUSC5Q8IXB3 177 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 LSMEM1Q8N8F7 131 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 OR56B1Q8NGI3 324 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 LOC105371242A0A075B767 164 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 SIRPB1O00241 398 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 LIPFP07098 398 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 RAB3BP20337 219 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 KCNJ3P48549 501 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF425Q6IV72 752 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF534Q76KX8 674 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 OR2M2Q96R28 347 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 OPN3Q9H1Y3 402 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-218ENST00000640036 C1orf123Q9NWV4 160 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 A4GNTQ9UNA3 340 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 TRAPPC4Q9Y296 219 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 KLK4Q9Y5K2 254 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 IGHV1-45A0A0A0MS14 117 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 LOC100130705A0A1B0GUX0 176 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 GOSR2O14653 212 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF254O75437 659 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 SCGB1D1O95968 90 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 IL7P13232 177 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF17P17021 662 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 PGFP49763 221 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 FLI1Q01543 452 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-218ENST00000640036 AMMECR1LQ6DCA0 310 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 TFAP2EQ6VUC0 442 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 H2BFWTQ7Z2G1 175 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 LRRC29Q8WV35 223 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 SLA2Q9H6Q3 261 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 MAGIXQ9H6Y5 334 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms