RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 COX5AP20674 150 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 FGF7P21781 194 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 TCTN1Q2MV58 587 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 AGBL4Q5VU57 503 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 COMMD7Q86VX2 200 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 LINC00052Q96N35 136 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 HAPLN2Q9GZV7 340 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 TAS2R5Q9NYW4 299 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 SF3B6Q9Y3B4 125 aaKnown RBP5.52□□□□□ -1.53
SCN1A-217ENST00000637988 ACOD1A6NK06 481 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 GNG7O60262 68 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 ZNF121P58317 390 aaPredicted RBP5.52□□□□□ -1.53
SCN1A-217ENST00000637988 YBX1P67809 324 aaKnown RBP5.52□□□□□ -1.53
SCN1A-217ENST00000637988 CDK5R2Q13319 367 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 DUSP5Q16690 384 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 ZNF793Q6ZN11 406 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 SVBPQ8N300 66 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 OR10D3Q8NH80 312 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 MRAP2Q96G30 205 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 ZNF486Q96H40 463 aaPredicted RBP5.52□□□□□ -1.53
SCN1A-217ENST00000637988 MIEN1Q9BRT3 115 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 BANF2Q9H503 90 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 TBX10O75333 385 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 SRD5A2P31213 254 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 SLC25A26Q70HW3 274 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 OR4A4PQ8NGN8 299 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 OR2G3Q8NGZ4 309 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 GNPNAT1Q96EK6 184 aaPredicted RBP5.52□□□□□ -1.53
SCN1A-217ENST00000637988 C4orf45Q96LM5 186 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 TMEM38AQ9H6F2 299 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 LSM2Q9Y333 95 aaKnown RBP5.52□□□□□ -1.53
SCN1A-217ENST00000637988 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.52□□□□□ -1.53
SCN1A-217ENST00000637988 C3orf80F5H4A9 247 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 SP1P08047 785 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 GAMTQ14353 236 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 Q6ZN92 141 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 ZNF620Q6ZNG0 422 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 SLC16A12Q6ZSM3 486 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 CBLL1Q75N03 491 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 SYT8Q8NBV8 401 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 SFT2D1Q8WV19 159 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 GHSRQ92847 366 aa5.52□□□□□ -1.53
SCN1A-217ENST00000637988 GCGP01275 180 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 ARNTP27540 789 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 ETV4P43268 484 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 LRP10Q7Z4F1 713 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 C11orf42Q8N5U0 333 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 ADPRHL1Q8NDY3 354 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 OR52N4Q8NGI2 321 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 TMPRSS5Q9H3S3 457 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 PSENENQ9NZ42 101 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 FOXD3Q9UJU5 478 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-217ENST00000637988 OR2T8A6NH00 312 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 FUT7Q11130 342 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 COL19A1Q14993 1142 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 IAH1Q2TAA2 248 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-217ENST00000637988 SOHLH1Q5JUK2 328 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 THSD4Q6ZMP0 1018 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 ANKRD37Q7Z713 158 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 HSD17B11Q8NBQ5 300 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 OR2A1Q8NGT9 310 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 ZNF418Q8TF45 676 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-217ENST00000637988 CTDSP1Q9GZU7 261 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 SH3BGRL3Q9H299 93 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 ZNF552Q9H707 407 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-217ENST00000637988 MTCH2Q9Y6C9 303 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 R4GMQ9 66 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 MN1Q10571 1320 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-217ENST00000637988 OR6C68A6NDL8 312 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 M0R1X1 148 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 RRASP10301 218 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 PPP3CBP16298 524 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 NPPBP16860 134 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 PLAC9Q5JTB6 97 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 FDX2Q6P4F2 183 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 PP6455Q8WZ26 134 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 UFC1Q9Y3C8 167 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 DCTN6O00399 190 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 PIGAP37287 484 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 CXorf66Q5JRM2 361 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-217ENST00000637988 LYRM7Q5U5X0 104 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 PRR27Q6MZM9 219 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 TBPL2Q6SJ96 375 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 CENPVQ7Z7K6 275 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-217ENST00000637988 ANKRD13BQ86YJ7 626 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 ZNF596Q8TC21 504 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 NT5CQ8TCD5 201 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 OR2A5Q96R48 311 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 PBOV1Q9GZY1 135 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 SLC7A10Q9NS82 523 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 A4GNTQ9UNA3 340 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 ZDBF2Q9HCK1 2354 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 ZNF831Q5JPB2 1677 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 DIDO1Q9BTC0 2240 aaKnown RBP5.51□□□□□ -1.53
SCN1A-217ENST00000637988 LOC107986453A0A1B0GWG9 222 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 J3QR89 54 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 PLPP1O14494 284 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 GJB3O75712 270 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 PAPLNO95428 1278 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 GASTP01350 101 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms