RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 PTPMT1Q8WUK0 201 aaPredicted RBP3.54□□□□□ -1.84
SCN1A-214ENST00000637038 C8orf44Q96CB5 159 aa3.54□□□□□ -1.84
SCN1A-214ENST00000637038 PGAM5Q96HS1 289 aa3.54□□□□□ -1.84
SCN1A-214ENST00000637038 LRRC61Q9BV99 259 aa3.54□□□□□ -1.84
SCN1A-214ENST00000637038 PTDSS2Q9BVG9 487 aa3.54□□□□□ -1.84
SCN1A-214ENST00000637038 PBOV1Q9GZY1 135 aa3.54□□□□□ -1.84
SCN1A-214ENST00000637038 RAB33BQ9H082 229 aa3.54□□□□□ -1.84
SCN1A-214ENST00000637038 OR10A2Q9H208 303 aa3.54□□□□□ -1.84
SCN1A-214ENST00000637038 METTL7AQ9H8H3 244 aa3.54□□□□□ -1.84
SCN1A-214ENST00000637038 ELL3Q9HB65 397 aaPredicted RBP3.54□□□□□ -1.84
SCN1A-214ENST00000637038 SMCO4Q9NRQ5 59 aa3.54□□□□□ -1.84
SCN1A-214ENST00000637038 KCNK7Q9Y2U2 307 aa3.54□□□□□ -1.84
SCN1A-214ENST00000637038 MPDZO75970 2070 aa3.54□□□□□ -1.84
SCN1A-214ENST00000637038 A0A1B0GX78 115 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 TCRBV16S1A1N1A0A5B0 115 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 TP53I11O14683 189 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 TSPAN2O60636 221 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 EDN3P14138 238 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 CPT2P23786 658 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 CD38P28907 300 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 HOXA1P49639 335 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-214ENST00000637038 CLDN6P56747 220 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 INSM1Q01101 510 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-214ENST00000637038 PLA2G7Q13093 441 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 ZNF260Q3ZCT1 412 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 PABPC1L2AQ5JQF8 200 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 FAM74A1Q5RGS3 127 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 GLIPR1L1Q6UWM5 242 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 COX15Q7KZN9 410 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 ABHD12BQ7Z5M8 362 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-214ENST00000637038 ANGPTL5Q86XS5 388 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 ADPRHL1Q8NDY3 354 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 OR51T1Q8NGJ9 327 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 SLC25A28Q96A46 364 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 PIK3IP1Q96FE7 263 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 MRGPRX4Q96LA9 322 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 FOXN4Q96NZ1 517 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 NPAS1Q99742 590 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 SEC11CQ9BY50 192 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 CHST6Q9GZX3 395 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 UNKLQ9H9P5 680 aaKnown RBP3.53□□□□□ -1.84
SCN1A-214ENST00000637038 VSIG4Q9Y279 399 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 FLVCR1Q9Y5Y0 555 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 CEP192Q8TEP8 1941 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 TRAV14DV4A0A0A6YYC5 116 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 CLEC18AA5D8T8 446 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 DBX1A6NMT0 343 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 SERPINE3A8MV23 424 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 MASP2O00187 686 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 SULT2B1O00204 365 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 CDX4O14627 284 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-214ENST00000637038 JTBO76095 146 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 PMP2P02689 132 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 SFTPBP07988 381 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 HIST1H1DP16402 221 aaKnown RBP3.53□□□□□ -1.84
SCN1A-214ENST00000637038 S100GP29377 79 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 EIF1P41567 113 aaKnown RBP3.53□□□□□ -1.84
SCN1A-214ENST00000637038 GLP1RP43220 463 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 OR1D4P47884 311 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 BIDP55957 195 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 PPP1CAP62136 330 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 NR0B2Q15466 257 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 BEX5Q5H9J7 111 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 CLEC18BQ6UXF7 455 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 UNQ6126/PRO20091Q6UXV3 157 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 TMEM200AQ86VY9 491 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 LINC00346Q8IVM7 164 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 PRSS58Q8IYP2 241 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 CLEC18CQ8NCF0 446 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 SLC30A7Q8NEW0 376 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 POC1BQ8TC44 478 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 NUDCD2Q8WVJ2 157 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 TSLPQ969D9 159 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 ADIPOR1Q96A54 375 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 NAA11Q9BSU3 229 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-214ENST00000637038 TCEAL2Q9H3H9 227 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-214ENST00000637038 CNTD2Q9H8S5 307 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 PLEKHA2Q9HB19 425 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 FAM212BQ9NTI7 297 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-214ENST00000637038 MRPL22Q9NWU5 206 aaKnown RBP3.53□□□□□ -1.84
SCN1A-214ENST00000637038 GSKIPQ9P0R6 139 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 TNFSF12-TNFSF13A0A0A6YY99 330 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 METTL12A8MUP2 240 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 TGFBR3LH3BV60 316 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 J3KRW8 73 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 K7EPK0 472 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 LDLRAD4O15165 306 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 ALOX12BO75342 701 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 MED6O75586 246 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 TSPAN15O95858 294 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 CSTBP04080 98 aaKnown RBP3.53□□□□□ -1.84
SCN1A-214ENST00000637038 IGKV3-11P04433 115 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 S100A8P05109 93 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 NME1P15531 152 aaKnown RBP3.53□□□□□ -1.84
SCN1A-214ENST00000637038 ZNF43P17038 809 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 AGAP20933 346 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 ZNF84P51523 738 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 F2RL1P55085 397 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 LY6G6FQ5SQ64 297 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 HOGA1Q86XE5 327 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms