RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 ARRDC3Q96B67 414 aa8.03□□□□□ -1.12
VCL-206ENST00000623461 GSX1Q9H4S2 264 aaPredicted RBP8.03□□□□□ -1.12
VCL-206ENST00000623461 CREBZFQ9NS37 354 aa8.03□□□□□ -1.12
VCL-206ENST00000623461 CDC14CA4D256 554 aa8.03□□□□□ -1.12
VCL-206ENST00000623461 STUMQ69YW2 141 aa8.03□□□□□ -1.12
VCL-206ENST00000623461 IL22RA2Q969J5 263 aa8.03□□□□□ -1.12
VCL-206ENST00000623461 MAP1LC3B2A6NCE7 125 aa8.03□□□□□ -1.12
VCL-206ENST00000623461 ZNF737O75373 536 aa8.03□□□□□ -1.12
VCL-206ENST00000623461 ZFPL1O95159 310 aa8.03□□□□□ -1.12
VCL-206ENST00000623461 NRASP01111 189 aa8.03□□□□□ -1.12
VCL-206ENST00000623461 HRASP01112 189 aa8.03□□□□□ -1.12
VCL-206ENST00000623461 KRASP01116 189 aa8.03□□□□□ -1.12
VCL-206ENST00000623461 MLF1P58340 268 aa8.03□□□□□ -1.12
VCL-206ENST00000623461 ZNF542PQ5EBM4 170 aa8.03□□□□□ -1.12
VCL-206ENST00000623461 MORN1Q5T089 497 aa8.03□□□□□ -1.12
VCL-206ENST00000623461 NUBPLQ8TB37 319 aa8.03□□□□□ -1.12
VCL-206ENST00000623461 ATOH1Q92858 354 aaPredicted RBP8.03□□□□□ -1.12
VCL-206ENST00000623461 MAP1LC3BQ9GZQ8 125 aa8.03□□□□□ -1.12
VCL-206ENST00000623461 SLC2A9Q9NRM0 540 aa8.03□□□□□ -1.12
VCL-206ENST00000623461 GABRQQ9UN88 632 aa8.03□□□□□ -1.12
VCL-206ENST00000623461 SLC31A2O15432 143 aa8.03□□□□□ -1.12
VCL-206ENST00000623461 ERVFC1-1P60608 527 aa8.03□□□□□ -1.12
VCL-206ENST00000623461 PUSL1Q8N0Z8 303 aaKnown RBP8.03□□□□□ -1.12
VCL-206ENST00000623461 MANBALQ9NQG1 85 aa8.03□□□□□ -1.12
VCL-206ENST00000623461 SSUH2Q9Y2M2 353 aa8.03□□□□□ -1.12
VCL-206ENST00000623461 SBF2Q86WG5 1849 aa8.03□□□□□ -1.12
VCL-206ENST00000623461 FAM74A7A6NL05 159 aa8.03□□□□□ -1.12
VCL-206ENST00000623461 SEC11BP0C7V7 166 aa8.03□□□□□ -1.12
VCL-206ENST00000623461 DDTP30046 118 aa8.03□□□□□ -1.12
VCL-206ENST00000623461 REC114Q7Z4M0 266 aa8.03□□□□□ -1.12
VCL-206ENST00000623461 OR2C3Q8N628 320 aa8.03□□□□□ -1.12
VCL-206ENST00000623461 MRPS24Q96EL2 167 aaKnown RBP8.03□□□□□ -1.12
VCL-206ENST00000623461 LINC00615Q96LM1 132 aaPredicted RBP8.03□□□□□ -1.12
VCL-206ENST00000623461 ESRP2Q9H6T0 727 aaKnown RBP8.03□□□□□ -1.12
VCL-206ENST00000623461 ZNF552Q9H707 407 aaPredicted RBP8.03□□□□□ -1.12
VCL-206ENST00000623461 WSB2Q9NYS7 404 aaPredicted RBP8.03□□□□□ -1.12
VCL-206ENST00000623461 GNG12Q9UBI6 72 aa8.03□□□□□ -1.12
VCL-206ENST00000623461 CXorf51AA0A1B0GTR3 108 aa8.02□□□□□ -1.12
VCL-206ENST00000623461 TEX50A0A1B0GTY4 177 aa8.02□□□□□ -1.12
VCL-206ENST00000623461 K7ERU9 68 aa8.02□□□□□ -1.12
VCL-206ENST00000623461 MRPL33O75394 65 aaKnown RBP8.02□□□□□ -1.12
VCL-206ENST00000623461 IAPPP10997 89 aa8.02□□□□□ -1.12
VCL-206ENST00000623461 HAAOP46952 286 aa8.02□□□□□ -1.12
VCL-206ENST00000623461 BSXQ3C1V8 233 aa8.02□□□□□ -1.12
VCL-206ENST00000623461 ABHD17BQ5VST6 288 aa8.02□□□□□ -1.12
VCL-206ENST00000623461 TAS1R1Q7RTX1 841 aa8.02□□□□□ -1.12
VCL-206ENST00000623461 SLC39A11Q8N1S5 342 aa8.02□□□□□ -1.12
VCL-206ENST00000623461 C17orf47Q8NEP4 570 aa8.02□□□□□ -1.12
VCL-206ENST00000623461 RPS4Y2Q8TD47 263 aa8.02□□□□□ -1.12
VCL-206ENST00000623461 C4orf45Q96LM5 186 aa8.02□□□□□ -1.12
VCL-206ENST00000623461 MAGT1Q9H0U3 335 aa8.02□□□□□ -1.12
VCL-206ENST00000623461 A0A1W2PNV4 684 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 CLEC18AA5D8T8 446 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 FGF2P09038 288 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 ZNF17P17021 662 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 SRYQ05066 204 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 DPPA3Q6W0C5 159 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 CLEC18CQ8NCF0 446 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 DYRK2Q92630 601 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 MS4A3Q96HJ5 214 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 OBP2BQ9NPH6 170 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 ARPC3O15145 178 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 FBP1P09467 338 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 SLC2A1P11166 492 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 FAM181AQ8N9Y4 354 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 PTPRZ1P23471 2315 aaPredicted RBP8.02□□□□□ -1.13
VCL-206ENST00000623461 LY75O60449 1722 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 A0A087WUJ7 227 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 PEX11BO96011 259 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 SUB1P53999 127 aaKnown RBP eCLIP8.02□□□□□ -1.133e-6■□□□□ 9.7
VCL-206ENST00000623461 RRADP55042 308 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 IL24Q13007 206 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 ASTLQ6HA08 431 aaPredicted RBP8.02□□□□□ -1.13
VCL-206ENST00000623461 M1APQ8TC57 530 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 SNX22Q96L94 193 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 TAAR6Q96RI8 345 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 RAB33BQ9H082 229 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 NAA60Q9H7X0 242 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 METTL1Q9UBP6 276 aaKnown RBP8.02□□□□□ -1.13
VCL-206ENST00000623461 NEU3Q9UQ49 428 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 F11P03951 625 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 PCP4P48539 62 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 PABPC1L2AQ5JQF8 200 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 ZNF660Q6AZW8 331 aaPredicted RBP8.02□□□□□ -1.13
VCL-206ENST00000623461 ADPRHL1Q8NDY3 354 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 PP6455Q8WZ26 134 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 TRIB1Q96RU8 372 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 LSM2Q9Y333 95 aaKnown RBP8.02□□□□□ -1.13
VCL-206ENST00000623461 H3BQ15 152 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 TCF21O43680 179 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 NTHL1P78549 312 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 PRTGQ2VWP7 1150 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 WDR38Q5JTN6 314 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 SLC35E1Q96K37 410 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 LRIT1Q9P2V4 623 aa8.02□□□□□ -1.13
VCL-206ENST00000623461 TDRD15B5MCY1 1934 aaKnown RBP8.02□□□□□ -1.13
VCL-206ENST00000623461 A0A0B4J2E0 115 aa8.01□□□□□ -1.13
VCL-206ENST00000623461 A0A1B0GX12 115 aa8.01□□□□□ -1.13
VCL-206ENST00000623461 PRAMEF25A6NGN4 478 aa8.01□□□□□ -1.13
VCL-206ENST00000623461 LANCL1O43813 399 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 116.9 ms