RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 THBS4P35443 961 aa12.54□□□□□ -0.4
CPSF1-212ENST00000616140 ZAR1Q86SH2 424 aa12.54□□□□□ -0.4
CPSF1-212ENST00000616140 OR10P1Q8NGE3 313 aa12.54□□□□□ -0.4
CPSF1-212ENST00000616140 BSCL2Q96G97 398 aaPredicted RBP12.54□□□□□ -0.4
CPSF1-212ENST00000616140 SSUH2Q9Y2M2 353 aa12.54□□□□□ -0.4
CPSF1-212ENST00000616140 PDGFBP01127 241 aaPredicted RBP12.54□□□□□ -0.4
CPSF1-212ENST00000616140 PPIAP62937 165 aaKnown RBP12.54□□□□□ -0.4
CPSF1-212ENST00000616140 SRSF5Q13243 272 aaKnown RBP12.54□□□□□ -0.4
CPSF1-212ENST00000616140 ETFDHQ16134 617 aa12.54□□□□□ -0.4
CPSF1-212ENST00000616140 WIPI1Q5MNZ9 446 aaPredicted RBP12.54□□□□□ -0.4
CPSF1-212ENST00000616140 PWWP2BQ6NUJ5 590 aa12.54□□□□□ -0.4
CPSF1-212ENST00000616140 OR2V1Q8NHB1 315 aa12.54□□□□□ -0.4
CPSF1-212ENST00000616140 FUT3P21217 361 aa12.54□□□□□ -0.4
CPSF1-212ENST00000616140 GLRA1P23415 457 aa12.54□□□□□ -0.4
CPSF1-212ENST00000616140 AKR1C3P42330 323 aa12.54□□□□□ -0.4
CPSF1-212ENST00000616140 IFITM3Q01628 133 aa12.54□□□□□ -0.4
CPSF1-212ENST00000616140 HLXQ14774 488 aaPredicted RBP12.54□□□□□ -0.4
CPSF1-212ENST00000616140 GPA33Q99795 319 aa12.54□□□□□ -0.4
CPSF1-212ENST00000616140 RHOFQ9HBH0 211 aa12.54□□□□□ -0.4
CPSF1-212ENST00000616140 MRM2Q9UI43 246 aaKnown RBP12.54□□□□□ -0.4
CPSF1-212ENST00000616140 ZNF230Q9UIE0 474 aaPredicted RBP12.54□□□□□ -0.4
CPSF1-212ENST00000616140 RNF150Q9ULK6 438 aa12.54□□□□□ -0.4
CPSF1-212ENST00000616140 ATRXP46100 2492 aa12.53□□□□□ -0.4
CPSF1-212ENST00000616140 HIST1H1DP16402 221 aaKnown RBP12.53□□□□□ -0.4
CPSF1-212ENST00000616140 CD226Q15762 336 aa12.53□□□□□ -0.4
CPSF1-212ENST00000616140 S100A7AQ86SG5 101 aa12.53□□□□□ -0.4
CPSF1-212ENST00000616140 OR52N4Q8NGI2 321 aa12.53□□□□□ -0.4
CPSF1-212ENST00000616140 HGDQ93099 445 aa12.53□□□□□ -0.4
CPSF1-212ENST00000616140 SPSB1Q96BD6 273 aa12.53□□□□□ -0.4
CPSF1-212ENST00000616140 TGIF2Q9GZN2 237 aa12.53□□□□□ -0.4
CPSF1-212ENST00000616140 SHARPINQ9H0F6 387 aa12.53□□□□□ -0.4
CPSF1-212ENST00000616140 PLA2G10O15496 165 aa12.53□□□□□ -0.4
CPSF1-212ENST00000616140 AQP8O94778 261 aa12.53□□□□□ -0.4
CPSF1-212ENST00000616140 CRYAAP02489 173 aa12.53□□□□□ -0.4
CPSF1-212ENST00000616140 DSCR4P56555 118 aaPredicted RBP12.53□□□□□ -0.4
CPSF1-212ENST00000616140 C20orf196Q8IYI0 205 aa12.53□□□□□ -0.4
CPSF1-212ENST00000616140 OR5M8Q8NGP6 311 aa12.53□□□□□ -0.4
CPSF1-212ENST00000616140 UQCC2Q9BRT2 126 aa12.53□□□□□ -0.4
CPSF1-212ENST00000616140 FUT6P51993 359 aa12.53□□□□□ -0.4
CPSF1-212ENST00000616140 CLEC12BQ2HXU8 276 aa12.53□□□□□ -0.4
CPSF1-212ENST00000616140 HLA-BQ31612 363 aa12.53□□□□□ -0.4
CPSF1-212ENST00000616140 SPATA46Q5T0L3 261 aa12.53□□□□□ -0.4
CPSF1-212ENST00000616140 GUSBP11Q6P575 273 aa12.53□□□□□ -0.4
CPSF1-212ENST00000616140 ZADH2Q8N4Q0 377 aa12.53□□□□□ -0.4
CPSF1-212ENST00000616140 ZDHHC22Q8N966 263 aa12.53□□□□□ -0.4
CPSF1-212ENST00000616140 OR1F12Q8NHA8 337 aa12.53□□□□□ -0.4
CPSF1-212ENST00000616140 UBALD1Q8TB05 177 aa12.53□□□□□ -0.4
CPSF1-212ENST00000616140 PRRX2Q99811 253 aa12.53□□□□□ -0.4
CPSF1-212ENST00000616140 DECR2Q9NUI1 292 aa12.53□□□□□ -0.4
CPSF1-212ENST00000616140 CXCL3P19876 107 aa12.52□□□□□ -0.4
CPSF1-212ENST00000616140 SLC37A1P57057 533 aa12.52□□□□□ -0.4
CPSF1-212ENST00000616140 EXTL1Q92935 676 aa12.52□□□□□ -0.4
CPSF1-212ENST00000616140 NCOR1O75376 2440 aa12.52□□□□□ -0.4
CPSF1-212ENST00000616140 CLN5O75503 358 aa12.52□□□□□ -0.4
CPSF1-212ENST00000616140 EML2O95834 649 aa12.52□□□□□ -0.4
CPSF1-212ENST00000616140 GP1BAP07359 652 aa12.52□□□□□ -0.4
CPSF1-212ENST00000616140 PTGFRP43088 359 aa12.52□□□□□ -0.4
CPSF1-212ENST00000616140 TRILQ7L0X0 811 aa12.52□□□□□ -0.4
CPSF1-212ENST00000616140 TVP23CQ96ET8 276 aa12.52□□□□□ -0.4
CPSF1-212ENST00000616140 LIN7CQ9NUP9 197 aaKnown RBP12.52□□□□□ -0.4
CPSF1-212ENST00000616140 DOCK5Q9H7D0 1870 aa12.52□□□□□ -0.41
CPSF1-212ENST00000616140 A0A1W2PPV9 198 aa12.52□□□□□ -0.41
CPSF1-212ENST00000616140 LRRC30A6NM36 301 aa12.52□□□□□ -0.41
CPSF1-212ENST00000616140 IGHA1P01876 353 aa12.52□□□□□ -0.41
CPSF1-212ENST00000616140 GPR12P47775 334 aa12.52□□□□□ -0.41
CPSF1-212ENST00000616140 PMP22Q01453 160 aa12.52□□□□□ -0.41
CPSF1-212ENST00000616140 IRF3Q14653 427 aa12.52□□□□□ -0.41
CPSF1-212ENST00000616140 B3GNTL1Q67FW5 361 aaPredicted RBP12.52□□□□□ -0.41
CPSF1-212ENST00000616140 OR8U1Q8NH10 309 aa12.52□□□□□ -0.41
CPSF1-212ENST00000616140 OR4F5Q8NH21 305 aa12.52□□□□□ -0.41
CPSF1-212ENST00000616140 VSTM2LQ96N03 204 aa12.52□□□□□ -0.41
CPSF1-212ENST00000616140 OR4F4Q96R69 305 aa12.52□□□□□ -0.41
CPSF1-212ENST00000616140 CABLES2Q9BTV7 478 aa12.52□□□□□ -0.41
CPSF1-212ENST00000616140 ZNF275Q9NSD4 429 aaPredicted RBP12.52□□□□□ -0.41
CPSF1-212ENST00000616140 PAPPA2Q9BXP8 1791 aa12.52□□□□□ -0.41
CPSF1-212ENST00000616140 ABCA3Q99758 1704 aa12.52□□□□□ -0.41
CPSF1-212ENST00000616140 SPTAN1Q13813 2472 aaKnown RBP12.52□□□□□ -0.41
CPSF1-212ENST00000616140 ZNF787Q6DD87 383 aa12.52□□□□□ -0.41
CPSF1-212ENST00000616140 GVQW1Q8N7I0 195 aa12.52□□□□□ -0.41
CPSF1-212ENST00000616140 NECAP1Q8NC96 275 aa12.52□□□□□ -0.41
CPSF1-212ENST00000616140 SMIM7Q9BQ49 75 aa12.52□□□□□ -0.41
CPSF1-212ENST00000616140 HIF1ANQ9NWT6 349 aa12.52□□□□□ -0.41
CPSF1-212ENST00000616140 ADAMTSL1Q8N6G6 1762 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 SDK2Q58EX2 2172 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 NKX6-3A6NJ46 265 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 SNRNP200O75643 2136 aaKnown RBP12.51□□□□□ -0.41
CPSF1-212ENST00000616140 ZIC2O95409 532 aaPredicted RBP12.51□□□□□ -0.41
CPSF1-212ENST00000616140 SEMG1P04279 462 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 CT45A6P0DMU7 189 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 CT45A5P0DMU8 189 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 CT45A7P0DMV0 189 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 CT45A8P0DMV1 189 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 CT45A9P0DMV2 189 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 ZNF79Q15937 498 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 C4orf17Q53FE4 359 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 CT45A2Q5DJT8 189 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 CT45A1Q5HYN5 189 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 DRAM2Q6UX65 266 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 OR2W3Q7Z3T1 314 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 PRSS42Q7Z5A4 293 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms