RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 TBPL2Q6SJ96 375 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 CFAP77Q6ZQR2 320 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 VTCN1Q7Z7D3 282 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 LINC00346Q8IVM7 164 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 ZDHHC21Q8IVQ6 265 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 PDZD9Q8IXQ8 264 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 KLHDC1Q8N7A1 406 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 C19orf18Q8NEA5 215 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 PROKR2Q8NFJ6 384 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 OR1M1Q8NGA1 313 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 OR56B2PQ8NGI1 322 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 OR4K13Q8NH42 304 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 H1FXQ92522 213 aaKnown RBP5.15□□□□□ -1.59
CUX1-220ENST00000607092 SPSB4Q96A44 273 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 MCUR1Q96AQ8 359 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 FOXRED1Q96CU9 486 aaPredicted RBP5.15□□□□□ -1.59
CUX1-220ENST00000607092 R3HDM4Q96D70 268 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 TSSK2Q96PF2 358 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 NMNAT3Q96T66 252 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 CCL13Q99616 98 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 KCNJ15Q99712 375 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 SSX3Q99909 188 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 TLNRD1Q9H1K6 362 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 EFCAB1Q9HAE3 211 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 RPRD1BQ9NQG5 326 aaKnown RBP5.15□□□□□ -1.59
CUX1-220ENST00000607092 HAO2Q9NYQ3 351 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 GMPR2Q9P2T1 348 aaKnown RBP5.15□□□□□ -1.59
CUX1-220ENST00000607092 SLC25A10Q9UBX3 287 aaPredicted RBP5.15□□□□□ -1.59
CUX1-220ENST00000607092 TAGLN3Q9UI15 199 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 COL7A1Q02388 2944 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 PLXNB1O43157 2135 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 DNAH3Q8TD57 4116 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 LOC100653049A0A140TA62 436 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 B2RBV5 119 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 E9PQ18 207 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 J3KTA2 159 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 F2RL2O00254 374 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 DCTN6O00399 190 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 SIGLEC5O15389 551 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 GSC2O15499 205 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 KRT34O76011 436 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 SERPINA1P01009 418 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 VSIG10L2P0DP72 767 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 SNRPBP14678 240 aaKnown RBP5.14□□□□□ -1.59
CUX1-220ENST00000607092 HIST1H1CP16403 213 aaKnown RBP5.14□□□□□ -1.59
CUX1-220ENST00000607092 ZNF26P17031 533 aaPredicted RBP5.14□□□□□ -1.59
CUX1-220ENST00000607092 NDUFB7P17568 137 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 HNRNPA0Q13151 305 aaKnown RBP5.14□□□□□ -1.59
CUX1-220ENST00000607092 IKZF1Q13422 519 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 DNAL1Q4LDG9 190 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 GLYATL3Q5SZD4 288 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 STUMQ69YW2 141 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 WDR82Q6UXN9 313 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 ZNF788Q6ZQV5 615 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 ZNF826PQ6ZT77 177 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 SLC16A9Q7RTY1 509 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 DCXRQ7Z4W1 244 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 OR2AE1Q8NHA4 323 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 OR5K1Q8NHB7 308 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 ZNF671Q8TAW3 534 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 RPS4Y2Q8TD47 263 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 DPF1Q92782 380 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 TNFRSF14Q92956 283 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 SLAMF6Q96DU3 332 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 AJUBAQ96IF1 538 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 AKR1E2Q96JD6 320 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 DHRS1Q96LJ7 313 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 KCTD14Q9BQ13 255 aaPredicted RBP5.14□□□□□ -1.59
CUX1-220ENST00000607092 PAPOLGQ9BWT3 736 aaKnown RBP5.14□□□□□ -1.59
CUX1-220ENST00000607092 PRSS22Q9GZN4 317 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 OR10A2Q9H208 303 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 OR52D1Q9H346 318 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 PNRC2Q9NPJ4 139 aaKnown RBP5.14□□□□□ -1.59
CUX1-220ENST00000607092 ABCB10Q9NRK6 738 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 ARL8BQ9NVJ2 186 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 RASL12Q9NYN1 266 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 TAS2R1Q9NYW7 299 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 BAIAP2Q9UQB8 552 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 SNX13Q9Y5W8 968 aa5.14□□□□□ -1.59
CUX1-220ENST00000607092 TRBV4-1A0A0J9YWV2 114 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 VGLL3A8MV65 326 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 SLC1A7O00341 560 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 ACOT8O14734 319 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 CDIPTO14735 213 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 TBX1O43435 398 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 ANGPTL7O43827 346 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 KRT36O76013 467 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 GADD45GO95257 159 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 IFNGP01579 166 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 ANXA2P07355 339 aaKnown RBP5.13□□□□□ -1.59
CUX1-220ENST00000607092 ACAA1P09110 424 aaPredicted RBP5.13□□□□□ -1.59
CUX1-220ENST00000607092 SPARCP09486 303 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 PF4V1P10720 104 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 RRM2P31350 389 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 ENTPD1P49961 510 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 PRKXP51817 358 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 ARHGDIBP52566 201 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 ERVFRD-1P60508 538 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 SLC35A2P78381 396 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 KHDRBS1Q07666 443 aaKnown RBP eCLIP5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms