RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 ACOT8O14734 319 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 DUX4L2P0CJ85 424 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 DUX4L3P0CJ86 424 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 DUX4L4P0CJ87 422 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 DUX4L5P0CJ88 424 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 DUX4L6P0CJ89 424 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 DUX4L7P0CJ90 424 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 OSMP13725 252 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 PSMA6P60900 246 aaKnown RBP8.09□□□□□ -1.11
VRK3-216ENST00000599342 GUCA2AQ02747 115 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 IKZF1Q13422 519 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 SLC35D3Q5M8T2 416 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 OLFML2AQ68BL7 652 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 DUX4L9Q6RFH8 374 aaPredicted RBP8.09□□□□□ -1.11
VRK3-216ENST00000599342 KRT77Q7Z794 578 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 COMMD2Q86X83 199 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 AQP12AQ8IXF9 295 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 C11orf53Q8IXP5 236 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 PDZD9Q8IXQ8 264 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 ZDHHC23Q8IYP9 409 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 KIR3DL3Q8N743 410 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 FAM216BQ8N7L0 139 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 PAPD5Q8NDF8 572 aaKnown RBP8.09□□□□□ -1.11
VRK3-216ENST00000599342 OR10Z1Q8NGY1 313 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 FAM81AQ8TBF8 368 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 CANT1Q8WVQ1 401 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 WFDC12Q8WWY7 111 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 LRTOMTQ8WZ04 291 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 H1FXQ92522 213 aaKnown RBP8.09□□□□□ -1.11
VRK3-216ENST00000599342 PIGCQ92535 297 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 DYRK2Q92630 601 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 HIST1H2AAQ96QV6 131 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 PKP2Q99959 881 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 TLNRD1Q9H1K6 362 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 DPAGT1Q9H3H5 408 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 PPP1R3EQ9H7J1 279 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 TAS2R1Q9NYW7 299 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 C1RLQ9NZP8 487 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 ZNF319Q9P2F9 582 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 DUX4Q9UBX2 424 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 FAM96BQ9Y3D0 163 aa8.09□□□□□ -1.11
VRK3-216ENST00000599342 A0A0U1RQK1 487 aa8.08□□□□□ -1.12
VRK3-216ENST00000599342 BTBD17A6NE02 478 aa8.08□□□□□ -1.12
VRK3-216ENST00000599342 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.08□□□□□ -1.12
VRK3-216ENST00000599342 FCN3O75636 299 aa8.08□□□□□ -1.12
VRK3-216ENST00000599342 NDUFA7O95182 113 aa8.08□□□□□ -1.12
VRK3-216ENST00000599342 CST4P01036 141 aa8.08□□□□□ -1.12
VRK3-216ENST00000599342 T-ENOLP0DO92 83 aa8.08□□□□□ -1.12
VRK3-216ENST00000599342 ANXA8P13928 327 aa8.08□□□□□ -1.12
VRK3-216ENST00000599342 EEF1B2P24534 225 aaKnown RBP8.08□□□□□ -1.12
VRK3-216ENST00000599342 ACKR3P25106 362 aa8.08□□□□□ -1.12
VRK3-216ENST00000599342 ELF3P78545 371 aaPredicted RBP8.08□□□□□ -1.12
VRK3-216ENST00000599342 CDK5Q00535 292 aa8.08□□□□□ -1.12
VRK3-216ENST00000599342 FLOT2Q14254 428 aa8.08□□□□□ -1.12
VRK3-216ENST00000599342 LCN1P1Q5VSP4 162 aa8.08□□□□□ -1.12
VRK3-216ENST00000599342 STUMQ69YW2 141 aa8.08□□□□□ -1.12
VRK3-216ENST00000599342 KCTD18Q6PI47 426 aaPredicted RBP8.08□□□□□ -1.12
VRK3-216ENST00000599342 BRICD5Q6PL45 260 aa8.08□□□□□ -1.12
VRK3-216ENST00000599342 TMEM179BQ7Z7N9 219 aa8.08□□□□□ -1.12
VRK3-216ENST00000599342 SPATA24Q86W54 205 aa8.08□□□□□ -1.12
VRK3-216ENST00000599342 LDLRAD3Q86YD5 345 aa8.08□□□□□ -1.12
VRK3-216ENST00000599342 CPOQ8IVL8 374 aa8.08□□□□□ -1.12
VRK3-216ENST00000599342 FGFRL1Q8N441 504 aa8.08□□□□□ -1.12
VRK3-216ENST00000599342 OR5T2Q8NGG2 359 aa8.08□□□□□ -1.12
VRK3-216ENST00000599342 OR8B12Q8NGG6 310 aa8.08□□□□□ -1.12
VRK3-216ENST00000599342 OR5P3Q8WZ94 311 aa8.08□□□□□ -1.12
VRK3-216ENST00000599342 RPL3LQ92901 407 aaKnown RBP8.08□□□□□ -1.12
VRK3-216ENST00000599342 SEH1LQ96EE3 360 aa8.08□□□□□ -1.12
VRK3-216ENST00000599342 RNF170Q96K19 258 aa8.08□□□□□ -1.12
VRK3-216ENST00000599342 DMRTB1Q96MA1 342 aa8.08□□□□□ -1.12
VRK3-216ENST00000599342 DNTTIP1Q9H147 329 aa8.08□□□□□ -1.12
VRK3-216ENST00000599342 SIRT7Q9NRC8 400 aa8.08□□□□□ -1.12
VRK3-216ENST00000599342 SNTG1Q9NSN8 517 aa8.08□□□□□ -1.12
VRK3-216ENST00000599342 HAO2Q9NYQ3 351 aa8.08□□□□□ -1.12
VRK3-216ENST00000599342 LRP12Q9Y561 859 aa8.08□□□□□ -1.12
VRK3-216ENST00000599342 ZNF816-ZNF321PA0A0X1KG74 233 aa8.07□□□□□ -1.12
VRK3-216ENST00000599342 A0A1W2PQ09 198 aa8.07□□□□□ -1.12
VRK3-216ENST00000599342 CLPSL1A2RUU4 121 aa8.07□□□□□ -1.12
VRK3-216ENST00000599342 GYG2O15488 501 aa8.07□□□□□ -1.12
VRK3-216ENST00000599342 AKR7A2O43488 359 aa8.07□□□□□ -1.12
VRK3-216ENST00000599342 GPR137BO60478 399 aa8.07□□□□□ -1.12
VRK3-216ENST00000599342 PAHP00439 452 aa8.07□□□□□ -1.12
VRK3-216ENST00000599342 IGHV4-59P01825 116 aa8.07□□□□□ -1.12
VRK3-216ENST00000599342 FBP1P09467 338 aa8.07□□□□□ -1.12
VRK3-216ENST00000599342 GLRA1P23415 457 aa8.07□□□□□ -1.12
VRK3-216ENST00000599342 IER3P46695 156 aa8.07□□□□□ -1.12
VRK3-216ENST00000599342 MAP2K3P46734 347 aa8.07□□□□□ -1.12
VRK3-216ENST00000599342 GPM6AP51674 278 aa8.07□□□□□ -1.12
VRK3-216ENST00000599342 CBX1P83916 185 aa8.07□□□□□ -1.12
VRK3-216ENST00000599342 RELBQ01201 579 aa8.07□□□□□ -1.12
VRK3-216ENST00000599342 APOFQ13790 326 aa8.07□□□□□ -1.12
VRK3-216ENST00000599342 BLMHQ13867 455 aa8.07□□□□□ -1.12
VRK3-216ENST00000599342 SNAPC1Q16533 368 aa8.07□□□□□ -1.12
VRK3-216ENST00000599342 DNAL1Q4LDG9 190 aa8.07□□□□□ -1.12
VRK3-216ENST00000599342 ATPAF1Q5TC12 328 aaPredicted RBP8.07□□□□□ -1.12
VRK3-216ENST00000599342 METAP1DQ6UB28 335 aaPredicted RBP8.07□□□□□ -1.12
VRK3-216ENST00000599342 GDPGP1Q6ZNW5 385 aa8.07□□□□□ -1.12
VRK3-216ENST00000599342 THAP5Q7Z6K1 395 aa8.07□□□□□ -1.12
VRK3-216ENST00000599342 HS3ST5Q8IZT8 346 aa8.07□□□□□ -1.12
VRK3-216ENST00000599342 LY6G5BQ8NDX9 201 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms