RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 ATP6V1B1P15313 513 aa11.21□□□□□ -0.61
TRIM28-211ENST00000597968 TGFBR2P37173 567 aa11.21□□□□□ -0.61
TRIM28-211ENST00000597968 CAV3P56539 151 aa11.21□□□□□ -0.61
TRIM28-211ENST00000597968 DEFA6Q01524 100 aa11.21□□□□□ -0.61
TRIM28-211ENST00000597968 ACSM1Q08AH1 577 aa11.21□□□□□ -0.61
TRIM28-211ENST00000597968 SLC35D3Q5M8T2 416 aa11.21□□□□□ -0.61
TRIM28-211ENST00000597968 NCR3LG1Q68D85 454 aa11.21□□□□□ -0.61
TRIM28-211ENST00000597968 STUMQ69YW2 141 aa11.21□□□□□ -0.61
TRIM28-211ENST00000597968 DEGS2Q6QHC5 323 aa11.21□□□□□ -0.61
TRIM28-211ENST00000597968 FAM57BQ71RH2 274 aa11.21□□□□□ -0.61
TRIM28-211ENST00000597968 WDR86Q86TI4 376 aa11.21□□□□□ -0.61
TRIM28-211ENST00000597968 OR10G2Q8NGC3 310 aa11.21□□□□□ -0.61
TRIM28-211ENST00000597968 LINC01006Q8NI28 216 aa11.21□□□□□ -0.61
TRIM28-211ENST00000597968 CCDC124Q96CT7 223 aaKnown RBP11.21□□□□□ -0.61
TRIM28-211ENST00000597968 ASB9Q96DX5 294 aa11.21□□□□□ -0.61
TRIM28-211ENST00000597968 PGAM5Q96HS1 289 aa11.21□□□□□ -0.61
TRIM28-211ENST00000597968 PAPOLGQ9BWT3 736 aaKnown RBP11.21□□□□□ -0.61
TRIM28-211ENST00000597968 TEX12Q9BXU0 123 aa11.21□□□□□ -0.61
TRIM28-211ENST00000597968 RASSF4Q9H2L5 321 aa11.21□□□□□ -0.61
TRIM28-211ENST00000597968 ARMC1Q9NVT9 282 aa11.21□□□□□ -0.61
TRIM28-211ENST00000597968 ZNRD1Q9P1U0 126 aa11.21□□□□□ -0.61
TRIM28-211ENST00000597968 A0A0U1RQK1 487 aa11.2□□□□□ -0.62
TRIM28-211ENST00000597968 FCN3O75636 299 aa11.2□□□□□ -0.62
TRIM28-211ENST00000597968 TSPAN9O75954 239 aa11.2□□□□□ -0.62
TRIM28-211ENST00000597968 IGHV4-59P01825 116 aa11.2□□□□□ -0.62
TRIM28-211ENST00000597968 CLUP10909 449 aa11.2□□□□□ -0.62
TRIM28-211ENST00000597968 CALB2P22676 271 aa11.2□□□□□ -0.62
TRIM28-211ENST00000597968 DCTDP32321 178 aa11.2□□□□□ -0.62
TRIM28-211ENST00000597968 PROK1P58294 105 aa11.2□□□□□ -0.62
TRIM28-211ENST00000597968 HOXA4Q00056 320 aaPredicted RBP11.2□□□□□ -0.62
TRIM28-211ENST00000597968 TAF9Q16594 264 aa11.2□□□□□ -0.62
TRIM28-211ENST00000597968 KLHL12Q53G59 568 aa11.2□□□□□ -0.62
TRIM28-211ENST00000597968 ZNF788Q6ZQV5 615 aa11.2□□□□□ -0.62
TRIM28-211ENST00000597968 PIP4P2Q8N4L2 257 aa11.2□□□□□ -0.62
TRIM28-211ENST00000597968 GIPC3Q8TF64 312 aa11.2□□□□□ -0.62
TRIM28-211ENST00000597968 OR5P3Q8WZ94 311 aa11.2□□□□□ -0.62
TRIM28-211ENST00000597968 RAB3IPQ96QF0 476 aaPredicted RBP11.2□□□□□ -0.62
TRIM28-211ENST00000597968 HIST1H2AAQ96QV6 131 aa11.2□□□□□ -0.62
TRIM28-211ENST00000597968 CCL13Q99616 98 aa11.2□□□□□ -0.62
TRIM28-211ENST00000597968 NIPSNAP1Q9BPW8 284 aa11.2□□□□□ -0.62
TRIM28-211ENST00000597968 C1orf21Q9H246 121 aa11.2□□□□□ -0.62
TRIM28-211ENST00000597968 METTL8Q9H825 291 aaKnown RBP11.2□□□□□ -0.62
TRIM28-211ENST00000597968 TAS2R1Q9NYW7 299 aa11.2□□□□□ -0.62
TRIM28-211ENST00000597968 PDP1Q9P0J1 537 aaPredicted RBP11.2□□□□□ -0.62
TRIM28-211ENST00000597968 DNAJB11Q9UBS4 358 aa11.2□□□□□ -0.62
TRIM28-211ENST00000597968 VPREB3Q9UKI3 123 aa11.2□□□□□ -0.62
TRIM28-211ENST00000597968 RHBDD3Q9Y3P4 386 aa11.2□□□□□ -0.62
TRIM28-211ENST00000597968 N6AMT1Q9Y5N5 214 aa11.2□□□□□ -0.62
TRIM28-211ENST00000597968 CMYA5Q8N3K9 4069 aa11.19□□□□□ -0.62
TRIM28-211ENST00000597968 TRBV23-1A0A0A0MS06 115 aa11.19□□□□□ -0.62
TRIM28-211ENST00000597968 A0A0U1RQV5 110 aa11.19□□□□□ -0.62
TRIM28-211ENST00000597968 PRR23D1E9PI22 279 aaPredicted RBP11.19□□□□□ -0.62
TRIM28-211ENST00000597968 H3BN98 237 aa11.19□□□□□ -0.62
TRIM28-211ENST00000597968 ACOT8O14734 319 aa11.19□□□□□ -0.62
TRIM28-211ENST00000597968 PRR23D2P0DMB1 279 aaPredicted RBP11.19□□□□□ -0.62
TRIM28-211ENST00000597968 UBE2E1P51965 193 aa11.19□□□□□ -0.62
TRIM28-211ENST00000597968 PSMA6P60900 246 aaKnown RBP11.19□□□□□ -0.62
TRIM28-211ENST00000597968 CSNK2BP67870 215 aa11.19□□□□□ -0.62
TRIM28-211ENST00000597968 BLMHQ13867 455 aa11.19□□□□□ -0.62
TRIM28-211ENST00000597968 ZBTB37Q5TC79 503 aa11.19□□□□□ -0.62
TRIM28-211ENST00000597968 C11orf88Q6PI97 169 aa11.19□□□□□ -0.62
TRIM28-211ENST00000597968 ZDHHC23Q8IYP9 409 aa11.19□□□□□ -0.62
TRIM28-211ENST00000597968 IQCF1Q8N6M8 205 aa11.19□□□□□ -0.62
TRIM28-211ENST00000597968 ANGPTL6Q8NI99 470 aa11.19□□□□□ -0.62
TRIM28-211ENST00000597968 LRGUKQ96M69 825 aa11.19□□□□□ -0.62
TRIM28-211ENST00000597968 FEVQ99581 238 aa11.19□□□□□ -0.62
TRIM28-211ENST00000597968 THTPAQ9BU02 230 aa11.19□□□□□ -0.62
TRIM28-211ENST00000597968 CHID1Q9BWS9 393 aa11.19□□□□□ -0.62
TRIM28-211ENST00000597968 MED20Q9H944 212 aa11.19□□□□□ -0.62
TRIM28-211ENST00000597968 TNFRSF19Q9NS68 423 aa11.19□□□□□ -0.62
TRIM28-211ENST00000597968 ONECUT1Q9UBC0 465 aa11.19□□□□□ -0.62
TRIM28-211ENST00000597968 IGHV3OR15-7A0A075B7D8 119 aa11.18□□□□□ -0.62
TRIM28-211ENST00000597968 AQP12BA6NM10 295 aa11.18□□□□□ -0.62
TRIM28-211ENST00000597968 SIGLEC5O15389 551 aa11.18□□□□□ -0.62
TRIM28-211ENST00000597968 CST1P01037 141 aa11.18□□□□□ -0.62
TRIM28-211ENST00000597968 ACAA1P09110 424 aaPredicted RBP11.18□□□□□ -0.62
TRIM28-211ENST00000597968 MAP2K3P46734 347 aa11.18□□□□□ -0.62
TRIM28-211ENST00000597968 PRDX4Q13162 271 aa11.18□□□□□ -0.62
TRIM28-211ENST00000597968 AANATQ16613 207 aa11.18□□□□□ -0.62
TRIM28-211ENST00000597968 MIDNQ504T8 468 aa11.18□□□□□ -0.62
TRIM28-211ENST00000597968 LCN1P1Q5VSP4 162 aa11.18□□□□□ -0.62
TRIM28-211ENST00000597968 DHRS7BQ6IAN0 325 aaPredicted RBP11.18□□□□□ -0.62
TRIM28-211ENST00000597968 KCTD18Q6PI47 426 aaPredicted RBP11.18□□□□□ -0.62
TRIM28-211ENST00000597968 TMEM179BQ7Z7N9 219 aa11.18□□□□□ -0.62
TRIM28-211ENST00000597968 AQP12AQ8IXF9 295 aa11.18□□□□□ -0.62
TRIM28-211ENST00000597968 ADGRG5Q8IZF4 528 aa11.18□□□□□ -0.62
TRIM28-211ENST00000597968 FAM216BQ8N7L0 139 aa11.18□□□□□ -0.62
TRIM28-211ENST00000597968 OR5D13Q8NGL4 314 aa11.18□□□□□ -0.62
TRIM28-211ENST00000597968 ZNF671Q8TAW3 534 aa11.18□□□□□ -0.62
TRIM28-211ENST00000597968 DNAJC9Q8WXX5 260 aa11.18□□□□□ -0.62
TRIM28-211ENST00000597968 TNFRSF14Q92956 283 aa11.18□□□□□ -0.62
TRIM28-211ENST00000597968 PKP2Q99959 881 aa11.18□□□□□ -0.62
TRIM28-211ENST00000597968 FAM234AQ9H0X4 552 aa11.18□□□□□ -0.62
TRIM28-211ENST00000597968 YY1AP1Q9H869 796 aa11.18□□□□□ -0.62
TRIM28-211ENST00000597968 ZNF556Q9HAH1 456 aa11.18□□□□□ -0.62
TRIM28-211ENST00000597968 RASL12Q9NYN1 266 aa11.18□□□□□ -0.62
TRIM28-211ENST00000597968 DNAJC27Q9NZQ0 273 aa11.18□□□□□ -0.62
TRIM28-211ENST00000597968 ZNF319Q9P2F9 582 aa11.18□□□□□ -0.62
TRIM28-211ENST00000597968 SLC25A10Q9UBX3 287 aaPredicted RBP11.18□□□□□ -0.62
TRIM28-211ENST00000597968 LRP12Q9Y561 859 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms