RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 GRNP28799 593 aaKnown RBP13.08□□□□□ -0.32
TRIM28-209ENST00000597423 RBP2P50120 134 aa13.08□□□□□ -0.32
TRIM28-209ENST00000597423 MTCP1P56278 107 aa13.08□□□□□ -0.32
TRIM28-209ENST00000597423 SCAND1P57086 179 aa13.08□□□□□ -0.32
TRIM28-209ENST00000597423 KLF3P57682 345 aaPredicted RBP13.08□□□□□ -0.32
TRIM28-209ENST00000597423 PRDX4Q13162 271 aa13.08□□□□□ -0.32
TRIM28-209ENST00000597423 RIN1Q13671 783 aa13.08□□□□□ -0.32
TRIM28-209ENST00000597423 UBE2V2Q15819 145 aa13.08□□□□□ -0.32
TRIM28-209ENST00000597423 ASPHD2Q6ICH7 369 aa13.08□□□□□ -0.32
TRIM28-209ENST00000597423 SPERTQ8NA61 448 aa13.08□□□□□ -0.32
TRIM28-209ENST00000597423 OR8G5Q8NG78 346 aa13.08□□□□□ -0.32
TRIM28-209ENST00000597423 OR52N4Q8NGI2 321 aa13.08□□□□□ -0.32
TRIM28-209ENST00000597423 OR51A2Q8NGJ7 313 aa13.08□□□□□ -0.32
TRIM28-209ENST00000597423 OR13G1Q8NGZ3 307 aa13.08□□□□□ -0.32
TRIM28-209ENST00000597423 BORCS8Q96FH0 119 aa13.08□□□□□ -0.32
TRIM28-209ENST00000597423 CEP19Q96LK0 163 aa13.08□□□□□ -0.32
TRIM28-209ENST00000597423 CYSLTR2Q9NS75 346 aa13.08□□□□□ -0.32
TRIM28-209ENST00000597423 CGGBP1Q9UFW8 167 aaPredicted RBP13.08□□□□□ -0.32
TRIM28-209ENST00000597423 DUSP13Q9UII6 198 aa13.08□□□□□ -0.32
TRIM28-209ENST00000597423 KLF2Q9Y5W3 355 aaPredicted RBP13.08□□□□□ -0.32
TRIM28-209ENST00000597423 A0A0G2JK05 382 aa13.07□□□□□ -0.32
TRIM28-209ENST00000597423 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.07□□□□□ -0.32
TRIM28-209ENST00000597423 FAM230AA0A1W2PPH8 454 aa13.07□□□□□ -0.32
TRIM28-209ENST00000597423 PLSCR5A0PG75 271 aa13.07□□□□□ -0.32
TRIM28-209ENST00000597423 WIPF3A6NGB9 483 aa13.07□□□□□ -0.32
TRIM28-209ENST00000597423 RGS5O15539 181 aa13.07□□□□□ -0.32
TRIM28-209ENST00000597423 IGHV3-13P01766 116 aa13.07□□□□□ -0.32
TRIM28-209ENST00000597423 UBBP0CG47 229 aa13.07□□□□□ -0.32
TRIM28-209ENST00000597423 HTR2CP28335 458 aa13.07□□□□□ -0.32
TRIM28-209ENST00000597423 BMXP51813 675 aa13.07□□□□□ -0.32
TRIM28-209ENST00000597423 ERVS71-1P61550 626 aa13.07□□□□□ -0.32
TRIM28-209ENST00000597423 KISS1Q15726 138 aa13.07□□□□□ -0.32
TRIM28-209ENST00000597423 C1orf100Q5SVJ3 147 aa13.07□□□□□ -0.32
TRIM28-209ENST00000597423 HES5Q5TA89 166 aa13.07□□□□□ -0.32
TRIM28-209ENST00000597423 VHLLQ6RSH7 139 aa13.07□□□□□ -0.32
TRIM28-209ENST00000597423 OR5AS1Q8N127 324 aa13.07□□□□□ -0.32
TRIM28-209ENST00000597423 OR8S1Q8NH09 359 aa13.07□□□□□ -0.32
TRIM28-209ENST00000597423 TMEM171Q8WVE6 324 aa13.07□□□□□ -0.32
TRIM28-209ENST00000597423 CMTM3Q96MX0 182 aa13.07□□□□□ -0.32
TRIM28-209ENST00000597423 S100A13Q99584 98 aa13.07□□□□□ -0.32
TRIM28-209ENST00000597423 SLC30A2Q9BRI3 323 aa13.07□□□□□ -0.32
TRIM28-209ENST00000597423 NPDC1Q9NQX5 325 aaPredicted RBP13.07□□□□□ -0.32
TRIM28-209ENST00000597423 PCDHB16Q9NRJ7 776 aa13.07□□□□□ -0.32
TRIM28-209ENST00000597423 CA10Q9NS85 328 aa13.07□□□□□ -0.32
TRIM28-209ENST00000597423 COMMD3Q9UBI1 195 aa13.07□□□□□ -0.32
TRIM28-209ENST00000597423 GHRLQ9UBU3 117 aa13.07□□□□□ -0.32
TRIM28-209ENST00000597423 RNF115Q9Y4L5 304 aa13.07□□□□□ -0.32
TRIM28-209ENST00000597423 PCNX1Q96RV3 2341 aa13.07□□□□□ -0.32
TRIM28-209ENST00000597423 IGKV1-9A0A0C4DH69 117 aa13.06□□□□□ -0.32
TRIM28-209ENST00000597423 OR5B21A6NL26 309 aa13.06□□□□□ -0.32
TRIM28-209ENST00000597423 CA6P23280 308 aa13.06□□□□□ -0.32
TRIM28-209ENST00000597423 MPV17P39210 176 aa13.06□□□□□ -0.32
TRIM28-209ENST00000597423 EVX1P49640 407 aa13.06□□□□□ -0.32
TRIM28-209ENST00000597423 LSAMPQ13449 338 aa13.06□□□□□ -0.32
TRIM28-209ENST00000597423 SNTB1Q13884 538 aaKnown RBP13.06□□□□□ -0.32
TRIM28-209ENST00000597423 OR8G1Q15617 311 aa13.06□□□□□ -0.32
TRIM28-209ENST00000597423 FAM189A2Q15884 450 aa13.06□□□□□ -0.32
TRIM28-209ENST00000597423 NR2C2APQ86WQ0 139 aa13.06□□□□□ -0.32
TRIM28-209ENST00000597423 DMRTC2Q8IXT2 367 aaPredicted RBP13.06□□□□□ -0.32
TRIM28-209ENST00000597423 BHLHE23Q8NDY6 225 aa13.06□□□□□ -0.32
TRIM28-209ENST00000597423 UBASH3BQ8TF42 649 aa13.06□□□□□ -0.32
TRIM28-209ENST00000597423 MRPL24Q96A35 216 aaKnown RBP13.06□□□□□ -0.32
TRIM28-209ENST00000597423 RNF170Q96K19 258 aa13.06□□□□□ -0.32
TRIM28-209ENST00000597423 GFI1Q99684 422 aa13.06□□□□□ -0.32
TRIM28-209ENST00000597423 RTL8AQ9BWD3 113 aa13.06□□□□□ -0.32
TRIM28-209ENST00000597423 SMURF1Q9HCE7 757 aa13.06□□□□□ -0.32
TRIM28-209ENST00000597423 SPATA2Q9UM82 520 aa13.06□□□□□ -0.32
TRIM28-209ENST00000597423 ETV7Q9Y603 341 aa13.06□□□□□ -0.32
TRIM28-209ENST00000597423 PMF1-BGLAPU3KQ54 211 aa13.06□□□□□ -0.32
TRIM28-209ENST00000597423 RTTNQ86VV8 2226 aa13.05□□□□□ -0.32
TRIM28-209ENST00000597423 GOSR1O95249 250 aa13.05□□□□□ -0.32
TRIM28-209ENST00000597423 CYB5AP00167 134 aa13.05□□□□□ -0.32
TRIM28-209ENST00000597423 SLC2A2P11168 524 aaPredicted RBP13.05□□□□□ -0.32
TRIM28-209ENST00000597423 ARSBP15848 533 aa13.05□□□□□ -0.32
TRIM28-209ENST00000597423 PRSS12P56730 875 aa13.05□□□□□ -0.32
TRIM28-209ENST00000597423 GNG3P63215 75 aa13.05□□□□□ -0.32
TRIM28-209ENST00000597423 GPR176Q14439 515 aa13.05□□□□□ -0.32
TRIM28-209ENST00000597423 ANGPTL5Q86XS5 388 aa13.05□□□□□ -0.32
TRIM28-209ENST00000597423 ZNF573Q86YE8 665 aa13.05□□□□□ -0.32
TRIM28-209ENST00000597423 OR6Q1Q8NGQ2 317 aa13.05□□□□□ -0.32
TRIM28-209ENST00000597423 TRMT10AQ8TBZ6 339 aaKnown RBP13.05□□□□□ -0.32
TRIM28-209ENST00000597423 S100ZQ8WXG8 99 aa13.05□□□□□ -0.32
TRIM28-209ENST00000597423 OR5P3Q8WZ94 311 aa13.05□□□□□ -0.32
TRIM28-209ENST00000597423 FAM3DQ96BQ1 224 aa13.05□□□□□ -0.32
TRIM28-209ENST00000597423 PLK3Q9H4B4 646 aa13.05□□□□□ -0.32
TRIM28-209ENST00000597423 CNTD2Q9H8S5 307 aa13.05□□□□□ -0.32
TRIM28-209ENST00000597423 LIN7BQ9HAP6 207 aa13.05□□□□□ -0.32
TRIM28-209ENST00000597423 C14orf119Q9NWQ9 140 aa13.05□□□□□ -0.32
TRIM28-209ENST00000597423 CRIM1Q9NZV1 1036 aa13.05□□□□□ -0.32
TRIM28-209ENST00000597423 FZR1Q9UM11 496 aa13.05□□□□□ -0.32
TRIM28-209ENST00000597423 IGLV3-9A0A075B6K5 115 aa13.04□□□□□ -0.32
TRIM28-209ENST00000597423 LOC100289279A0A1B0GTE1 492 aa13.04□□□□□ -0.32
TRIM28-209ENST00000597423 BPNT1O95861 308 aa13.04□□□□□ -0.32
TRIM28-209ENST00000597423 TMEM225BP0DP42 221 aa13.04□□□□□ -0.32
TRIM28-209ENST00000597423 APOBEC3AP31941 199 aaPredicted RBP13.04□□□□□ -0.32
TRIM28-209ENST00000597423 SERPINF1P36955 418 aa13.04□□□□□ -0.32
TRIM28-209ENST00000597423 TALDO1P37837 337 aa13.04□□□□□ -0.32
TRIM28-209ENST00000597423 PTGFRP43088 359 aa13.04□□□□□ -0.32
TRIM28-209ENST00000597423 DAZAP2Q15038 168 aaPredicted RBP13.04□□□□□ -0.32
TRIM28-209ENST00000597423 FAM166AQ6J272 317 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms