RNA–Protein interactions for RNA: ENST00000584186.1

CDK5RAP3-233, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 3

Gene CDK5RAP3, Length 482 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-233	ENST00000584186	RUSC1-AS1	Q66K80	236 aa		11.3	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	DUX4L9	Q6RFH8	374 aa	Predicted RBP	11.3	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	BTN2A1	Q7KYR7	527 aa		11.3	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	TCEANC	Q8N8B7	351 aa		11.3	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	PNLDC1	Q8NA58	520 aa	Known RBP	11.3	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	OR5T2	Q8NGG2	359 aa		11.3	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	ZDHHC16	Q969W1	377 aa		11.3	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	SLC25A28	Q96A46	364 aa		11.3	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	C1orf147	Q96MC9	270 aa	Predicted RBP	11.3	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	HIST1H2AA	Q96QV6	131 aa		11.3	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	CNN2	Q99439	309 aa	Known RBP	11.3	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	SNTG1	Q9NSN8	517 aa		11.3	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	H2AFY2	Q9P0M6	372 aa	Predicted RBP	11.3	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	DNAJB11	Q9UBS4	358 aa		11.3	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	DUX4	Q9UBX2	424 aa		11.3	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	GTF2A1L	Q9UNN4	478 aa		11.3	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	AP4S1	Q9Y587	144 aa		11.3	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	DOCK11	Q5JSL3	2073 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	ZNF879	B4DU55	563 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	ATP5H	O75947	161 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	CST4	P01036	141 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	LIPF	P07098	398 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	EPHA2	P29317	976 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	CFHR2	P36980	270 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	GPM6A	P51674	278 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	ARF6	P62330	175 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	IKZF1	Q13422	519 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	TUSC1	Q2TAM9	212 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	DEFB112	Q30KQ8	113 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	AWAT1	Q58HT5	328 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	CEP78	Q5JTW2	689 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	C9orf139	Q6ZV77	190 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	AMIGO2	Q86SJ2	522 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	ZDHHC13	Q8IUH4	622 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	ZDHHC23	Q8IYP9	409 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	FGFRL1	Q8N441	504 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	FAM216B	Q8N7L0	139 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	ASB17	Q8WXJ9	295 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	OR5P3	Q8WZ94	311 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	FAM71F1	Q96KD3	344 aa	Predicted RBP	11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	WDFY2	Q96P53	400 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	IL4I1	Q96RQ9	567 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	PBOV1	Q9GZY1	135 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	ZMAT3	Q9HA38	289 aa	Known RBP	11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	ABCB9	Q9NP78	766 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	TNFRSF19	Q9NS68	423 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	FAM206A	Q9NX38	181 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	ZNF391	Q9UJN7	358 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	COPS3	Q9UNS2	423 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	TMEM14A	Q9Y6G1	99 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	NBEAL1	Q6ZS30	2694 aa		11.29	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	ZNF816-ZNF321P	A0A0X1KG74	233 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	TMEM210	A6NLX4	147 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	PRR32	B1ATL7	298 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	ANKHD1-EIF4EBP3	H7C0V5	636 aa	Predicted RBP	11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	P2RY10	O00398	339 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	MAGEB4	O15481	346 aa	Predicted RBP	11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	AKR7A2	O43488	359 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	FCN3	O75636	299 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	HKR1	P10072	659 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	MAP2K3	P46734	347 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	RIDA	P52758	137 aa	Known RBP	11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	FOXL1	Q12952	345 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	ZNF829	Q3KNS6	432 aa	Predicted RBP	11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	DMRTC1	Q5HYR2	192 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	SLX4IP	Q5VYV7	408 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	DEGS2	Q6QHC5	323 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	MEPCE	Q7L2J0	689 aa	Known RBP	11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	SLC36A1	Q7Z2H8	476 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	THAP5	Q7Z6K1	395 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	PDZD9	Q8IXQ8	264 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	ZNF679	Q8IYX0	411 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	SCCPDH	Q8NBX0	429 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	TMEM163	Q8TC26	289 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	OR51E1	Q8TCB6	317 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	HPSE2	Q8WWQ2	592 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	LRTOMT	Q8WZ04	291 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	TAF15	Q92804	592 aa	Known RBP eCLIP	11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	LHX4	Q969G2	390 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	PPP1R14A	Q96A00	147 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	OR8B4	Q96RC9	309 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	TBX15	Q96SF7	602 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	APOL4	Q9BPW4	351 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	FGF23	Q9GZV9	251 aa	Predicted RBP	11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	TLNRD1	Q9H1K6	362 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	WDR13	Q9H1Z4	485 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	SEMA6A	Q9H2E6	1030 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	GPR84	Q9NQS5	396 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	HAO2	Q9NYQ3	351 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186	KAAG1	Q9UBP8	84 aa		11.28	□□□□□ -0.6
CDK5RAP3-233	ENST00000584186		A0A0U1RQV5	110 aa		11.27	□□□□□ -0.61
CDK5RAP3-233	ENST00000584186	ACOD1	A6NK06	481 aa		11.27	□□□□□ -0.61
CDK5RAP3-233	ENST00000584186	ZAR1L	A6NP61	321 aa		11.27	□□□□□ -0.61
CDK5RAP3-233	ENST00000584186	SRRM5	B3KS81	715 aa		11.27	□□□□□ -0.61
CDK5RAP3-233	ENST00000584186	ZNF732	B4DXR9	585 aa		11.27	□□□□□ -0.61
CDK5RAP3-233	ENST00000584186	HOXA3	O43365	443 aa	Predicted RBP	11.27	□□□□□ -0.61
CDK5RAP3-233	ENST00000584186	NDUFB3	O43676	98 aa		11.27	□□□□□ -0.61
CDK5RAP3-233	ENST00000584186	ZNF254	O75437	659 aa		11.27	□□□□□ -0.61
CDK5RAP3-233	ENST00000584186	CIB2	O75838	187 aa		11.27	□□□□□ -0.61
CDK5RAP3-233	ENST00000584186	ECD	O95905	644 aa	Predicted RBP	11.27	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms