RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 WDR82Q6UXN9 313 aa16.81■□□□□ 0.28
SS18-218ENST00000581021 PRSS35Q8N3Z0 413 aa16.81■□□□□ 0.28
SS18-218ENST00000581021 EXOGQ9Y2C4 368 aaKnown RBP16.81■□□□□ 0.28
SS18-218ENST00000581021 MPC1Q9Y5U8 109 aa16.81■□□□□ 0.28
SS18-218ENST00000581021 SNX5Q9Y5X3 404 aa16.81■□□□□ 0.28
SS18-218ENST00000581021 WNK2Q9Y3S1 2297 aa16.81■□□□□ 0.28
SS18-218ENST00000581021 ZNF816-ZNF321PA0A0X1KG74 233 aa16.8■□□□□ 0.28
SS18-218ENST00000581021 TNFRSF13BO14836 293 aaPredicted RBP16.8■□□□□ 0.28
SS18-218ENST00000581021 FCN3O75636 299 aa16.8■□□□□ 0.28
SS18-218ENST00000581021 SULT1C4O75897 302 aa16.8■□□□□ 0.28
SS18-218ENST00000581021 DHRS3O75911 302 aa16.8■□□□□ 0.28
SS18-218ENST00000581021 RPS2P15880 293 aaKnown RBP16.8■□□□□ 0.28
SS18-218ENST00000581021 PSMB10P40306 273 aa16.8■□□□□ 0.28
SS18-218ENST00000581021 KIR3DL2P43630 455 aa16.8■□□□□ 0.28
SS18-218ENST00000581021 MAP2K3P46734 347 aa16.8■□□□□ 0.28
SS18-218ENST00000581021 ELF3P78545 371 aaPredicted RBP16.8■□□□□ 0.28
SS18-218ENST00000581021 IL5RAQ01344 420 aa16.8■□□□□ 0.28
SS18-218ENST00000581021 WDR38Q5JTN6 314 aa16.8■□□□□ 0.28
SS18-218ENST00000581021 CEP78Q5JTW2 689 aa16.8■□□□□ 0.28
SS18-218ENST00000581021 FAHD2BQ6P2I3 314 aaPredicted RBP16.8■□□□□ 0.28
SS18-218ENST00000581021 Q6ZSR3 168 aa16.8■□□□□ 0.28
SS18-218ENST00000581021 ZDHHC23Q8IYP9 409 aa16.8■□□□□ 0.28
SS18-218ENST00000581021 FTMTQ8N4E7 242 aa16.8■□□□□ 0.28
SS18-218ENST00000581021 SEMA6DQ8NFY4 1073 aa16.8■□□□□ 0.28
SS18-218ENST00000581021 RPL3LQ92901 407 aaKnown RBP16.8■□□□□ 0.28
SS18-218ENST00000581021 SEH1LQ96EE3 360 aa16.8■□□□□ 0.28
SS18-218ENST00000581021 FAHD2AQ96GK7 314 aa16.8■□□□□ 0.28
SS18-218ENST00000581021 RDH12Q96NR8 316 aa16.8■□□□□ 0.28
SS18-218ENST00000581021 ZNF649Q9BS31 505 aa16.8■□□□□ 0.28
SS18-218ENST00000581021 CTSZQ9UBR2 303 aa16.8■□□□□ 0.28
SS18-218ENST00000581021 OPN4Q9UHM6 478 aa16.8■□□□□ 0.28
SS18-218ENST00000581021 GNG8Q9UK08 70 aa16.8■□□□□ 0.28
SS18-218ENST00000581021 PIGLQ9Y2B2 252 aa16.8■□□□□ 0.28
SS18-218ENST00000581021 MYRFQ9Y2G1 1151 aa16.8■□□□□ 0.28
SS18-218ENST00000581021 V9GYS6 101 aa16.8■□□□□ 0.28
SS18-218ENST00000581021 DNHD1Q96M86 4753 aa16.8■□□□□ 0.28
SS18-218ENST00000581021 IGHV3OR15-7A0A075B7D8 119 aa16.79■□□□□ 0.28
SS18-218ENST00000581021 hCG_1807616A0A1W2PRN6 198 aa16.79■□□□□ 0.28
SS18-218ENST00000581021 ANXA2P2A6NMY6 339 aa16.79■□□□□ 0.28
SS18-218ENST00000581021 H3BSH0 61 aa16.79■□□□□ 0.28
SS18-218ENST00000581021 LGALS8O00214 317 aa16.79■□□□□ 0.28
SS18-218ENST00000581021 CDIPTO14735 213 aa16.79■□□□□ 0.28
SS18-218ENST00000581021 HNF1AP20823 631 aa16.79■□□□□ 0.28
SS18-218ENST00000581021 CCL1P22362 96 aa16.79■□□□□ 0.28
SS18-218ENST00000581021 PAX2Q02962 417 aa16.79■□□□□ 0.28
SS18-218ENST00000581021 MZT1Q08AG7 82 aa16.79■□□□□ 0.28
SS18-218ENST00000581021 SMN1Q16637 294 aaKnown RBP16.79■□□□□ 0.28
SS18-218ENST00000581021 ODF4Q2M2E3 257 aa16.79■□□□□ 0.28
SS18-218ENST00000581021 CDONQ4KMG0 1287 aa16.79■□□□□ 0.28
SS18-218ENST00000581021 FAM76BQ5HYJ3 339 aa16.79■□□□□ 0.28
SS18-218ENST00000581021 FAM90A1Q86YD7 464 aa16.79■□□□□ 0.28
SS18-218ENST00000581021 OR14K1Q8NGZ2 314 aa16.79■□□□□ 0.28
SS18-218ENST00000581021 LRRC29Q8WV35 223 aa16.79■□□□□ 0.28
SS18-218ENST00000581021 DACT3Q96B18 629 aaPredicted RBP16.79■□□□□ 0.28
SS18-218ENST00000581021 MICU1Q9BPX6 476 aa16.79■□□□□ 0.28
SS18-218ENST00000581021 RTL8AQ9BWD3 113 aa16.79■□□□□ 0.28
SS18-218ENST00000581021 NKX1-2Q9UD57 310 aaPredicted RBP16.79■□□□□ 0.28
SS18-218ENST00000581021 POLR3KQ9Y2Y1 108 aaPredicted RBP16.79■□□□□ 0.28
SS18-218ENST00000581021 LOC105371242A0A075B767 164 aa16.78■□□□□ 0.28
SS18-218ENST00000581021 A0A0G2JMP0 313 aa16.78■□□□□ 0.28
SS18-218ENST00000581021 A0A0X1KG70 313 aa16.78■□□□□ 0.28
SS18-218ENST00000581021 A6NIN4 97 aa16.78■□□□□ 0.28
SS18-218ENST00000581021 CASQ2O14958 399 aaPredicted RBP16.78■□□□□ 0.28
SS18-218ENST00000581021 FOXH1O75593 365 aa16.78■□□□□ 0.28
SS18-218ENST00000581021 ATP6V1B1P15313 513 aa16.78■□□□□ 0.28
SS18-218ENST00000581021 GPM6AP51674 278 aa16.78■□□□□ 0.28
SS18-218ENST00000581021 OR12D2P58182 307 aa16.78■□□□□ 0.28
SS18-218ENST00000581021 NANOS3P60323 173 aaKnown RBP16.78■□□□□ 0.28
SS18-218ENST00000581021 ACTC1P68032 377 aa16.78■□□□□ 0.28
SS18-218ENST00000581021 ACTA1P68133 377 aa16.78■□□□□ 0.28
SS18-218ENST00000581021 RIPPLY1Q0D2K3 151 aa16.78■□□□□ 0.28
SS18-218ENST00000581021 SNCBQ16143 134 aa16.78■□□□□ 0.28
SS18-218ENST00000581021 OGFRL1Q5TC84 451 aaPredicted RBP16.78■□□□□ 0.28
SS18-218ENST00000581021 ZNF691Q5VV52 312 aa16.78■□□□□ 0.28
SS18-218ENST00000581021 DCAF12L2Q5VW00 463 aa16.78■□□□□ 0.28
SS18-218ENST00000581021 TMEM42Q69YG0 159 aa16.78■□□□□ 0.28
SS18-218ENST00000581021 ZNF841Q6ZN19 808 aa16.78■□□□□ 0.28
SS18-218ENST00000581021 DCDC5Q6ZRR9 648 aa16.78■□□□□ 0.28
SS18-218ENST00000581021 OR4M2Q8NGB6 313 aa16.78■□□□□ 0.28
SS18-218ENST00000581021 RNF170Q96K19 258 aa16.78■□□□□ 0.28
SS18-218ENST00000581021 LRCH1Q9Y2L9 728 aa16.78■□□□□ 0.28
SS18-218ENST00000581021 DAPL1A0PJW8 107 aa16.77■□□□□ 0.28
SS18-218ENST00000581021 OOEPA6NGQ2 149 aa16.77■□□□□ 0.28
SS18-218ENST00000581021 ERICH4A6NGS2 130 aa16.77■□□□□ 0.28
SS18-218ENST00000581021 MPZL2O60487 215 aa16.77■□□□□ 0.28
SS18-218ENST00000581021 IGHA1P01876 353 aa16.77■□□□□ 0.28
SS18-218ENST00000581021 ADRA2CP18825 462 aa16.77■□□□□ 0.28
SS18-218ENST00000581021 PCMT1P22061 227 aa16.77■□□□□ 0.28
SS18-218ENST00000581021 ADARB1P78563 741 aaKnown RBP16.77■□□□□ 0.28
SS18-218ENST00000581021 ESCO2Q56NI9 601 aa16.77■□□□□ 0.28
SS18-218ENST00000581021 ZBTB37Q5TC79 503 aa16.77■□□□□ 0.28
SS18-218ENST00000581021 ACBD7Q8N6N7 88 aa16.77■□□□□ 0.28
SS18-218ENST00000581021 PACRGLQ8N7B6 248 aa16.77■□□□□ 0.28
SS18-218ENST00000581021 SCCPDHQ8NBX0 429 aa16.77■□□□□ 0.28
SS18-218ENST00000581021 CNIH3Q8TBE1 160 aa16.77■□□□□ 0.28
SS18-218ENST00000581021 NEIL1Q96FI4 390 aaPredicted RBP16.77■□□□□ 0.28
SS18-218ENST00000581021 SSBP3Q9BWW4 388 aaPredicted RBP16.77■□□□□ 0.28
SS18-218ENST00000581021 RNPEPL1Q9HAU8 725 aa16.77■□□□□ 0.28
SS18-218ENST00000581021 MIOXQ9UGB7 285 aa16.77■□□□□ 0.28
SS18-218ENST00000581021 PPIAL4CA0A0B4J2A2 164 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms