RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 KCNN3Q9UGI6 736 aa21.47■■□□□ 1.03
SHMT1-207ENST00000580002 DOPEY1Q5JWR5 2465 aa21.47■■□□□ 1.03
SHMT1-207ENST00000580002 FAM230AA0A1W2PPH8 454 aa21.46■■□□□ 1.03
SHMT1-207ENST00000580002 WIPF3A6NGB9 483 aa21.46■■□□□ 1.03
SHMT1-207ENST00000580002 DEFB108AA8MXU0 73 aa21.46■■□□□ 1.03
SHMT1-207ENST00000580002 HCKP08631 526 aa21.46■■□□□ 1.03
SHMT1-207ENST00000580002 MBNL2Q5VZF2 373 aaKnown RBP21.46■■□□□ 1.03
SHMT1-207ENST00000580002 PLCXD3Q63HM9 321 aa21.46■■□□□ 1.03
SHMT1-207ENST00000580002 HPSE2Q8WWQ2 592 aa21.46■■□□□ 1.03
SHMT1-207ENST00000580002 NGBQ9NPG2 151 aa21.46■■□□□ 1.03
SHMT1-207ENST00000580002 SPEF1Q9Y4P9 236 aa21.46■■□□□ 1.03
SHMT1-207ENST00000580002 IQCF6A8MYZ5 107 aa21.46■■□□□ 1.03
SHMT1-207ENST00000580002 AIPO00170 330 aa21.46■■□□□ 1.03
SHMT1-207ENST00000580002 CST4P01036 141 aa21.46■■□□□ 1.03
SHMT1-207ENST00000580002 MMP15P51511 669 aa21.46■■□□□ 1.03
SHMT1-207ENST00000580002 FAM166AQ6J272 317 aa21.46■■□□□ 1.03
SHMT1-207ENST00000580002 Q6ZR03 302 aa21.46■■□□□ 1.03
SHMT1-207ENST00000580002 SSX8Q7RTT4 187 aa21.46■■□□□ 1.03
SHMT1-207ENST00000580002 OR5D18Q8NGL1 313 aa21.46■■□□□ 1.03
SHMT1-207ENST00000580002 SLC25A28Q96A46 364 aa21.46■■□□□ 1.03
SHMT1-207ENST00000580002 MRPL37Q9BZE1 423 aaKnown RBP21.46■■□□□ 1.03
SHMT1-207ENST00000580002 MIXL1Q9H2W2 232 aa21.46■■□□□ 1.03
SHMT1-207ENST00000580002 ESRP2Q9H6T0 727 aaKnown RBP21.46■■□□□ 1.03
SHMT1-207ENST00000580002 PLGRKTQ9HBL7 147 aa21.46■■□□□ 1.03
SHMT1-207ENST00000580002 SMURF1Q9HCE7 757 aa21.46■■□□□ 1.03
SHMT1-207ENST00000580002 CA10Q9NS85 328 aa21.46■■□□□ 1.03
SHMT1-207ENST00000580002 PRF1P14222 555 aa21.45■■□□□ 1.02
SHMT1-207ENST00000580002 GCH1P30793 250 aa21.45■■□□□ 1.02
SHMT1-207ENST00000580002 UNQ6126/PRO20091Q6UXV3 157 aa21.45■■□□□ 1.02
SHMT1-207ENST00000580002 CSNK2A3Q8NEV1 391 aa21.45■■□□□ 1.02
SHMT1-207ENST00000580002 MSL2Q9HCI7 577 aa21.45■■□□□ 1.02
SHMT1-207ENST00000580002 IGHV3-64DA0A0J9YX35 117 aa21.44■■□□□ 1.02
SHMT1-207ENST00000580002 ZNF250P15622 560 aa21.44■■□□□ 1.02
SHMT1-207ENST00000580002 ZNF93P35789 620 aaPredicted RBP21.44■■□□□ 1.02
SHMT1-207ENST00000580002 KIR2DL3P43628 341 aa21.44■■□□□ 1.02
SHMT1-207ENST00000580002 OR3A4PP47883 348 aa21.44■■□□□ 1.02
SHMT1-207ENST00000580002 LSAMPQ13449 338 aa21.44■■□□□ 1.02
SHMT1-207ENST00000580002 MADCAM1Q13477 382 aa21.44■■□□□ 1.02
SHMT1-207ENST00000580002 ZBTB37Q5TC79 503 aa21.44■■□□□ 1.02
SHMT1-207ENST00000580002 GLT8D1Q68CQ7 371 aa21.44■■□□□ 1.02
SHMT1-207ENST00000580002 KRT74Q7RTS7 529 aa21.44■■□□□ 1.02
SHMT1-207ENST00000580002 C1QL2Q7Z5L3 287 aa21.44■■□□□ 1.02
SHMT1-207ENST00000580002 NUP37Q8NFH4 326 aa21.44■■□□□ 1.02
SHMT1-207ENST00000580002 OR6Q1Q8NGQ2 317 aa21.44■■□□□ 1.02
SHMT1-207ENST00000580002 LILRB1Q8NHL6 650 aaPredicted RBP21.44■■□□□ 1.02
SHMT1-207ENST00000580002 SYNPRQ8TBG9 265 aa21.44■■□□□ 1.02
SHMT1-207ENST00000580002 PIK3IP1Q96FE7 263 aa21.44■■□□□ 1.02
SHMT1-207ENST00000580002 LIN7BQ9HAP6 207 aa21.44■■□□□ 1.02
SHMT1-207ENST00000580002 ABCB9Q9NP78 766 aa21.44■■□□□ 1.02
SHMT1-207ENST00000580002 ABCA4P78363 2273 aa21.44■■□□□ 1.02
SHMT1-207ENST00000580002 A0A075B6Q4 140 aa21.43■■□□□ 1.02
SHMT1-207ENST00000580002 MEGF11A6BM72 1044 aa21.43■■□□□ 1.02
SHMT1-207ENST00000580002 ANKRD30BLA7E2S9 258 aa21.43■■□□□ 1.02
SHMT1-207ENST00000580002 E7EQL1 145 aa21.43■■□□□ 1.02
SHMT1-207ENST00000580002 TIMM8AO60220 97 aaPredicted RBP21.43■■□□□ 1.02
SHMT1-207ENST00000580002 OCMP0CE72 109 aaPredicted RBP21.43■■□□□ 1.02
SHMT1-207ENST00000580002 KITLGP21583 273 aa21.43■■□□□ 1.02
SHMT1-207ENST00000580002 RBMXP38159 391 aaKnown RBP21.43■■□□□ 1.02
SHMT1-207ENST00000580002 KISS1Q15726 138 aa21.43■■□□□ 1.02
SHMT1-207ENST00000580002 ANGPTL5Q86XS5 388 aa21.43■■□□□ 1.02
SHMT1-207ENST00000580002 LAX1Q8IWV1 398 aa21.43■■□□□ 1.02
SHMT1-207ENST00000580002 OR51D1Q8NGF3 324 aa21.43■■□□□ 1.02
SHMT1-207ENST00000580002 MMP27Q9H306 513 aa21.43■■□□□ 1.02
SHMT1-207ENST00000580002 OR5V1Q9UGF6 321 aa21.43■■□□□ 1.02
SHMT1-207ENST00000580002 POU2F3Q9UKI9 436 aa21.43■■□□□ 1.02
SHMT1-207ENST00000580002 SLC17A2O00624 439 aa21.43■■□□□ 1.02
SHMT1-207ENST00000580002 HPGDSO60760 199 aa21.43■■□□□ 1.02
SHMT1-207ENST00000580002 ALX3O95076 343 aa21.43■■□□□ 1.02
SHMT1-207ENST00000580002 C1orf100Q5SVJ3 147 aa21.43■■□□□ 1.02
SHMT1-207ENST00000580002 DTX3Q8N9I9 347 aa21.43■■□□□ 1.02
SHMT1-207ENST00000580002 ITPKCQ96DU7 683 aa21.43■■□□□ 1.02
SHMT1-207ENST00000580002 UTP20O75691 2785 aaKnown RBP21.42■■□□□ 1.02
SHMT1-207ENST00000580002 MLNRO43193 412 aa21.42■■□□□ 1.02
SHMT1-207ENST00000580002 ALDOBP05062 364 aa21.42■■□□□ 1.02
SHMT1-207ENST00000580002 CD3EP07766 207 aa21.42■■□□□ 1.02
SHMT1-207ENST00000580002 GPM6AP51674 278 aa21.42■■□□□ 1.02
SHMT1-207ENST00000580002 ADIPOQQ15848 244 aa21.42■■□□□ 1.02
SHMT1-207ENST00000580002 BEX5Q5H9J7 111 aa21.42■■□□□ 1.02
SHMT1-207ENST00000580002 OR10K2Q6IF99 312 aa21.42■■□□□ 1.02
SHMT1-207ENST00000580002 METAP1DQ6UB28 335 aaPredicted RBP21.42■■□□□ 1.02
SHMT1-207ENST00000580002 ZDHHC23Q8IYP9 409 aa21.42■■□□□ 1.02
SHMT1-207ENST00000580002 OR8G5Q8NG78 346 aa21.42■■□□□ 1.02
SHMT1-207ENST00000580002 LGALS14Q8TCE9 139 aa21.42■■□□□ 1.02
SHMT1-207ENST00000580002 METTL17Q9H7H0 456 aaPredicted RBP21.42■■□□□ 1.02
SHMT1-207ENST00000580002 STEAP1Q9UHE8 339 aa21.42■■□□□ 1.02
SHMT1-207ENST00000580002 C3orf80F5H4A9 247 aa21.41■■□□□ 1.02
SHMT1-207ENST00000580002 RGS5O15539 181 aa21.41■■□□□ 1.02
SHMT1-207ENST00000580002 PLATP00750 562 aa21.41■■□□□ 1.02
SHMT1-207ENST00000580002 SELEP16581 610 aa21.41■■□□□ 1.02
SHMT1-207ENST00000580002 IGFBP2P18065 325 aa21.41■■□□□ 1.02
SHMT1-207ENST00000580002 TUBG1P23258 451 aa21.41■■□□□ 1.02
SHMT1-207ENST00000580002 HTR2CP28335 458 aa21.41■■□□□ 1.02
SHMT1-207ENST00000580002 MTCP1P56278 107 aa21.41■■□□□ 1.02
SHMT1-207ENST00000580002 RAB11BQ15907 218 aa21.41■■□□□ 1.02
SHMT1-207ENST00000580002 NKAIN3Q8N8D7 197 aa21.41■■□□□ 1.02
SHMT1-207ENST00000580002 OR10AD1Q8NGE0 317 aa21.41■■□□□ 1.02
SHMT1-207ENST00000580002 OR5P3Q8WZ94 311 aa21.41■■□□□ 1.02
SHMT1-207ENST00000580002 TSC22D3Q99576 134 aa21.41■■□□□ 1.02
SHMT1-207ENST00000580002 TUBG2Q9NRH3 451 aa21.41■■□□□ 1.02
SHMT1-207ENST00000580002 MRPL15Q9P015 296 aaKnown RBP21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms