RNA–Protein interactions for RNA: ENST00000579727.5

RARA-209, Transcript of retinoic acid receptor alpha, human

TSL 4

Gene RARA, Length 564 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RARA-209	ENST00000579727	ZDHHC23	Q8IYP9	409 aa		13.71	□□□□□ -0.21
RARA-209	ENST00000579727	C1orf87	Q8N0U7	546 aa		13.71	□□□□□ -0.21
RARA-209	ENST00000579727	SETD9	Q8NE22	299 aa		13.71	□□□□□ -0.21
RARA-209	ENST00000579727	DEFB108B	Q8NET1	73 aa		13.71	□□□□□ -0.21
RARA-209	ENST00000579727	OR1M1	Q8NGA1	313 aa		13.71	□□□□□ -0.21
RARA-209	ENST00000579727		Q8TCH9	128 aa		13.71	□□□□□ -0.21
RARA-209	ENST00000579727	RNF166	Q96A37	237 aa	Predicted RBP	13.71	□□□□□ -0.21
RARA-209	ENST00000579727	C1orf159	Q96HA4	380 aa		13.71	□□□□□ -0.21
RARA-209	ENST00000579727	MICU1	Q9BPX6	476 aa		13.71	□□□□□ -0.21
RARA-209	ENST00000579727	RTL8A	Q9BWD3	113 aa		13.71	□□□□□ -0.21
RARA-209	ENST00000579727	VCX	Q9H320	206 aa		13.71	□□□□□ -0.21
RARA-209	ENST00000579727	ISG20L2	Q9H9L3	353 aa	Known RBP	13.71	□□□□□ -0.21
RARA-209	ENST00000579727	RNF7	Q9UBF6	113 aa		13.71	□□□□□ -0.21
RARA-209	ENST00000579727	PCDHGB1	Q9Y5G3	927 aa		13.71	□□□□□ -0.21
RARA-209	ENST00000579727	MPC1	Q9Y5U8	109 aa		13.71	□□□□□ -0.21
RARA-209	ENST00000579727	SVEP1	Q4LDE5	3571 aa		13.71	□□□□□ -0.21
RARA-209	ENST00000579727	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	13.7	□□□□□ -0.22
RARA-209	ENST00000579727	PPIAL4E	A0A075B759	164 aa		13.7	□□□□□ -0.22
RARA-209	ENST00000579727	CEACAM18	A8MTB9	384 aa		13.7	□□□□□ -0.22
RARA-209	ENST00000579727		B4DSR2	109 aa		13.7	□□□□□ -0.22
RARA-209	ENST00000579727	PPIAL4D	F5H284	164 aa		13.7	□□□□□ -0.22
RARA-209	ENST00000579727	PTBP3	O95758	552 aa	Known RBP	13.7	□□□□□ -0.22
RARA-209	ENST00000579727	FADS2	O95864	444 aa	Known RBP	13.7	□□□□□ -0.22
RARA-209	ENST00000579727	IGHA1	P01876	353 aa		13.7	□□□□□ -0.22
RARA-209	ENST00000579727	MSMB	P08118	114 aa		13.7	□□□□□ -0.22
RARA-209	ENST00000579727	PPIAL4F	P0DN26	164 aa		13.7	□□□□□ -0.22
RARA-209	ENST00000579727	EGR1	P18146	543 aa		13.7	□□□□□ -0.22
RARA-209	ENST00000579727	MDH2	P40926	338 aa	Known RBP	13.7	□□□□□ -0.22
RARA-209	ENST00000579727	AQP4	P55087	323 aa		13.7	□□□□□ -0.22
RARA-209	ENST00000579727	GMFB	P60983	142 aa		13.7	□□□□□ -0.22
RARA-209	ENST00000579727	LCN2	P80188	198 aa		13.7	□□□□□ -0.22
RARA-209	ENST00000579727	MZT1	Q08AG7	82 aa		13.7	□□□□□ -0.22
RARA-209	ENST00000579727	RIPPLY1	Q0D2K3	151 aa		13.7	□□□□□ -0.22
RARA-209	ENST00000579727	RAB40B	Q12829	278 aa		13.7	□□□□□ -0.22
RARA-209	ENST00000579727	SNCB	Q16143	134 aa		13.7	□□□□□ -0.22
RARA-209	ENST00000579727	PLCXD3	Q63HM9	321 aa		13.7	□□□□□ -0.22
RARA-209	ENST00000579727	SFRP4	Q6FHJ7	346 aa	Predicted RBP	13.7	□□□□□ -0.22
RARA-209	ENST00000579727	MOB3C	Q70IA8	216 aa		13.7	□□□□□ -0.22
RARA-209	ENST00000579727	GLCCI1	Q86VQ1	547 aa		13.7	□□□□□ -0.22
RARA-209	ENST00000579727	LRRC28	Q86X40	367 aa	Predicted RBP	13.7	□□□□□ -0.22
RARA-209	ENST00000579727	RDH10	Q8IZV5	341 aa		13.7	□□□□□ -0.22
RARA-209	ENST00000579727	KLHL36	Q8N4N3	616 aa		13.7	□□□□□ -0.22
RARA-209	ENST00000579727	SPIC	Q8N5J4	248 aa		13.7	□□□□□ -0.22
RARA-209	ENST00000579727	OR14K1	Q8NGZ2	314 aa		13.7	□□□□□ -0.22
RARA-209	ENST00000579727	OR51F2	Q8NH61	342 aa		13.7	□□□□□ -0.22
RARA-209	ENST00000579727	OR5P3	Q8WZ94	311 aa		13.7	□□□□□ -0.22
RARA-209	ENST00000579727	RPL3L	Q92901	407 aa	Known RBP	13.7	□□□□□ -0.22
RARA-209	ENST00000579727	ERGIC1	Q969X5	290 aa		13.7	□□□□□ -0.22
RARA-209	ENST00000579727	RNF170	Q96K19	258 aa		13.7	□□□□□ -0.22
RARA-209	ENST00000579727	TMEM165	Q9HC07	324 aa		13.7	□□□□□ -0.22
RARA-209	ENST00000579727	GPR173	Q9NS66	373 aa		13.7	□□□□□ -0.22
RARA-209	ENST00000579727	ERVK13-1	Q9NX77	482 aa		13.7	□□□□□ -0.22
RARA-209	ENST00000579727	PPIAL4A	Q9Y536	164 aa		13.7	□□□□□ -0.22
RARA-209	ENST00000579727		V9GYS6	101 aa		13.7	□□□□□ -0.22
RARA-209	ENST00000579727	SON	P18583	2426 aa	Known RBP	13.7	□□□□□ -0.22
RARA-209	ENST00000579727		A0A1B0GVI7	797 aa		13.69	□□□□□ -0.22
RARA-209	ENST00000579727	LOC107986453	A0A1B0GWG9	222 aa		13.69	□□□□□ -0.22
RARA-209	ENST00000579727	CDIPT	O14735	213 aa		13.69	□□□□□ -0.22
RARA-209	ENST00000579727	PLPP2	O43688	288 aa		13.69	□□□□□ -0.22
RARA-209	ENST00000579727	CRLF1	O75462	422 aa		13.69	□□□□□ -0.22
RARA-209	ENST00000579727	MTRF1	O75570	445 aa	Known RBP	13.69	□□□□□ -0.22
RARA-209	ENST00000579727	GPM6A	P51674	278 aa		13.69	□□□□□ -0.22
RARA-209	ENST00000579727	NANOS3	P60323	173 aa	Known RBP	13.69	□□□□□ -0.22
RARA-209	ENST00000579727	ACTA2	P62736	377 aa		13.69	□□□□□ -0.22
RARA-209	ENST00000579727	ACTG2	P63267	376 aa		13.69	□□□□□ -0.22
RARA-209	ENST00000579727	GALE	Q14376	348 aa		13.69	□□□□□ -0.22
RARA-209	ENST00000579727	CR1L	Q2VPA4	569 aa		13.69	□□□□□ -0.22
RARA-209	ENST00000579727	ZNF404	Q494X3	552 aa		13.69	□□□□□ -0.22
RARA-209	ENST00000579727	TMEM155	Q4W5P6	130 aa		13.69	□□□□□ -0.22
RARA-209	ENST00000579727	DOK3	Q7L591	496 aa		13.69	□□□□□ -0.22
RARA-209	ENST00000579727	C11orf53	Q8IXP5	236 aa		13.69	□□□□□ -0.22
RARA-209	ENST00000579727	C8orf59	Q8N0T1	100 aa	Predicted RBP	13.69	□□□□□ -0.22
RARA-209	ENST00000579727	GCSAM	Q8N6F7	178 aa		13.69	□□□□□ -0.22
RARA-209	ENST00000579727	LRRC29	Q8WV35	223 aa		13.69	□□□□□ -0.22
RARA-209	ENST00000579727	PELI1	Q96FA3	418 aa		13.69	□□□□□ -0.22
RARA-209	ENST00000579727	TMEM246	Q9BRR3	403 aa		13.69	□□□□□ -0.22
RARA-209	ENST00000579727	PATZ1	Q9HBE1	687 aa	Known RBP	13.69	□□□□□ -0.22
RARA-209	ENST00000579727	HIF1AN	Q9NWT6	349 aa		13.69	□□□□□ -0.22
RARA-209	ENST00000579727	ENPP5	Q9UJA9	477 aa		13.69	□□□□□ -0.22
RARA-209	ENST00000579727	IGHV3OR15-7	A0A075B7D8	119 aa		13.68	□□□□□ -0.22
RARA-209	ENST00000579727	ZNF732	B4DXR9	585 aa		13.68	□□□□□ -0.22
RARA-209	ENST00000579727		H0YAE9	185 aa		13.68	□□□□□ -0.22
RARA-209	ENST00000579727	SYT7	O43581	403 aa		13.68	□□□□□ -0.22
RARA-209	ENST00000579727	HTR1A	P08908	422 aa		13.68	□□□□□ -0.22
RARA-209	ENST00000579727	ATP6V1B1	P15313	513 aa		13.68	□□□□□ -0.22
RARA-209	ENST00000579727	RPS2	P15880	293 aa	Known RBP	13.68	□□□□□ -0.22
RARA-209	ENST00000579727	CCL1	P22362	96 aa		13.68	□□□□□ -0.22
RARA-209	ENST00000579727	DVL1P1	P54792	670 aa	Predicted RBP	13.68	□□□□□ -0.22
RARA-209	ENST00000579727	IL18R1	Q13478	541 aa		13.68	□□□□□ -0.22
RARA-209	ENST00000579727	KLHL22	Q53GT1	634 aa		13.68	□□□□□ -0.22
RARA-209	ENST00000579727	FAM120AOS	Q5T036	256 aa		13.68	□□□□□ -0.22
RARA-209	ENST00000579727	LAIR2	Q6ISS4	152 aa		13.68	□□□□□ -0.22
RARA-209	ENST00000579727	LYPD2	Q6UXB3	125 aa		13.68	□□□□□ -0.22
RARA-209	ENST00000579727	WDR82	Q6UXN9	313 aa		13.68	□□□□□ -0.22
RARA-209	ENST00000579727	MUC20	Q8N307	709 aa	Predicted RBP	13.68	□□□□□ -0.22
RARA-209	ENST00000579727	PLPP7	Q8NBV4	271 aa		13.68	□□□□□ -0.22
RARA-209	ENST00000579727	OR2G2	Q8NGZ5	317 aa		13.68	□□□□□ -0.22
RARA-209	ENST00000579727	TMEM186	Q96B77	213 aa		13.68	□□□□□ -0.22
RARA-209	ENST00000579727	HIST1H2AA	Q96QV6	131 aa		13.68	□□□□□ -0.22
RARA-209	ENST00000579727	ZNF649	Q9BS31	505 aa		13.68	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms