RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 EIF5AL1Q6IS14 154 aaKnown RBP13.78□□□□□ -0.2
NUP88-207ENST00000573584 SLC25A47Q6Q0C1 308 aa13.78□□□□□ -0.2
NUP88-207ENST00000573584 C1QL2Q7Z5L3 287 aa13.78□□□□□ -0.2
NUP88-207ENST00000573584 FAM89BQ8N5H3 189 aa13.78□□□□□ -0.2
NUP88-207ENST00000573584 PNLDC1Q8NA58 520 aaKnown RBP13.78□□□□□ -0.2
NUP88-207ENST00000573584 POC1BQ8TC44 478 aa13.78□□□□□ -0.2
NUP88-207ENST00000573584 NECAB3Q96P71 396 aaPredicted RBP13.78□□□□□ -0.2
NUP88-207ENST00000573584 TRBV11-1A0A0K0K1C0 115 aa13.77□□□□□ -0.2
NUP88-207ENST00000573584 ETV2O00321 342 aaPredicted RBP13.77□□□□□ -0.2
NUP88-207ENST00000573584 HEXBP07686 556 aa13.77□□□□□ -0.2
NUP88-207ENST00000573584 QDPRP09417 244 aa13.77□□□□□ -0.2
NUP88-207ENST00000573584 CCL1P22362 96 aa13.77□□□□□ -0.2
NUP88-207ENST00000573584 BLVRBP30043 206 aaPredicted RBP13.77□□□□□ -0.2
NUP88-207ENST00000573584 EIF5AP63241 154 aaKnown RBP13.77□□□□□ -0.2
NUP88-207ENST00000573584 PDZK1IP1Q13113 114 aa13.77□□□□□ -0.2
NUP88-207ENST00000573584 IL15RAQ13261 267 aa13.77□□□□□ -0.2
NUP88-207ENST00000573584 KISS1Q15726 138 aa13.77□□□□□ -0.2
NUP88-207ENST00000573584 SMRP1Q8NCR6 262 aa13.77□□□□□ -0.2
NUP88-207ENST00000573584 NPRL2Q8WTW4 380 aa13.77□□□□□ -0.2
NUP88-207ENST00000573584 OR5B2Q96R09 309 aa13.77□□□□□ -0.2
NUP88-207ENST00000573584 FER1L5A0AVI2 2057 aa13.77□□□□□ -0.2
NUP88-207ENST00000573584 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.77□□□□□ -0.21
NUP88-207ENST00000573584 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.77□□□□□ -0.21
NUP88-207ENST00000573584 FIGNL2A6NMB9 653 aa13.77□□□□□ -0.21
NUP88-207ENST00000573584 ZNF814B7Z6K7 855 aa13.77□□□□□ -0.21
NUP88-207ENST00000573584 MED6O75586 246 aa13.77□□□□□ -0.21
NUP88-207ENST00000573584 SERPINA5P05154 406 aa13.77□□□□□ -0.21
NUP88-207ENST00000573584 PTGFRP43088 359 aa13.77□□□□□ -0.21
NUP88-207ENST00000573584 CSNK1EP49674 416 aaKnown RBP13.77□□□□□ -0.21
NUP88-207ENST00000573584 SMAD4Q13485 552 aaKnown RBP13.77□□□□□ -0.21
NUP88-207ENST00000573584 CHRFAM7AQ494W8 412 aa13.77□□□□□ -0.21
NUP88-207ENST00000573584 GALNTL5Q7Z4T8 443 aa13.77□□□□□ -0.21
NUP88-207ENST00000573584 SSC4DQ8WTU2 575 aa13.77□□□□□ -0.21
NUP88-207ENST00000573584 EMG1Q92979 244 aaKnown RBP13.77□□□□□ -0.21
NUP88-207ENST00000573584 BIN3Q9NQY0 253 aa13.77□□□□□ -0.21
NUP88-207ENST00000573584 MEMO1Q9Y316 297 aa13.77□□□□□ -0.21
NUP88-207ENST00000573584 RNASEK-C17orf49H0YIS7 233 aa13.77□□□□□ -0.21
NUP88-207ENST00000573584 TAAR5O14804 337 aa13.77□□□□□ -0.21
NUP88-207ENST00000573584 CRYBA1P05813 215 aa13.77□□□□□ -0.21
NUP88-207ENST00000573584 RCC1P18754 421 aaPredicted RBP13.77□□□□□ -0.21
NUP88-207ENST00000573584 LPAR6P43657 344 aa13.77□□□□□ -0.21
NUP88-207ENST00000573584 OR14K1Q8NGZ2 314 aa13.77□□□□□ -0.21
NUP88-207ENST00000573584 OR6X1Q8NH79 312 aa13.77□□□□□ -0.21
NUP88-207ENST00000573584 GLYATL2Q8WU03 294 aa13.77□□□□□ -0.21
NUP88-207ENST00000573584 TGIF2Q9GZN2 237 aa13.77□□□□□ -0.21
NUP88-207ENST00000573584 E9PLN8 166 aa13.76□□□□□ -0.21
NUP88-207ENST00000573584 PIAS2O75928 621 aa13.76□□□□□ -0.21
NUP88-207ENST00000573584 ZNF43P17038 809 aa13.76□□□□□ -0.21
NUP88-207ENST00000573584 NME2P22392 152 aa13.76□□□□□ -0.21
NUP88-207ENST00000573584 MSX1P28360 303 aa13.76□□□□□ -0.21
NUP88-207ENST00000573584 NXPH1P58417 271 aa13.76□□□□□ -0.21
NUP88-207ENST00000573584 RHBDD1Q8TEB9 315 aa13.76□□□□□ -0.21
NUP88-207ENST00000573584 LIN37Q96GY3 246 aaPredicted RBP13.76□□□□□ -0.21
NUP88-207ENST00000573584 C12orf57Q99622 126 aa13.76□□□□□ -0.21
NUP88-207ENST00000573584 ESRP2Q9H6T0 727 aaKnown RBP13.76□□□□□ -0.21
NUP88-207ENST00000573584 METTL7AQ9H8H3 244 aa13.76□□□□□ -0.21
NUP88-207ENST00000573584 PMS2P1A4D2B8 440 aa13.76□□□□□ -0.21
NUP88-207ENST00000573584 C5orf63A6NC05 138 aa13.76□□□□□ -0.21
NUP88-207ENST00000573584 ZNF726A6NNF4 738 aa13.76□□□□□ -0.21
NUP88-207ENST00000573584 AGPAT2O15120 278 aa13.76□□□□□ -0.21
NUP88-207ENST00000573584 RAMP1O60894 148 aa13.76□□□□□ -0.21
NUP88-207ENST00000573584 HKR1P10072 659 aa13.76□□□□□ -0.21
NUP88-207ENST00000573584 SPP1P10451 314 aa13.76□□□□□ -0.21
NUP88-207ENST00000573584 ECH1Q13011 328 aa13.76□□□□□ -0.21
NUP88-207ENST00000573584 SLC25A53Q5H9E4 307 aa13.76□□□□□ -0.21
NUP88-207ENST00000573584 FAM69BQ5VUD6 431 aa13.76□□□□□ -0.21
NUP88-207ENST00000573584 RXFP4Q8TDU9 374 aa13.76□□□□□ -0.21
NUP88-207ENST00000573584 PGAM5Q96HS1 289 aa13.76□□□□□ -0.21
NUP88-207ENST00000573584 C14orf166Q9Y224 244 aaKnown RBP13.76□□□□□ -0.21
NUP88-207ENST00000573584 STMND1H3BQB6 276 aa13.75□□□□□ -0.21
NUP88-207ENST00000573584 HPNP05981 417 aa13.75□□□□□ -0.21
NUP88-207ENST00000573584 HEXAP06865 529 aa13.75□□□□□ -0.21
NUP88-207ENST00000573584 SFTA3P0C7M3 94 aa13.75□□□□□ -0.21
NUP88-207ENST00000573584 SERPINA2P20848 420 aa13.75□□□□□ -0.21
NUP88-207ENST00000573584 SFTPDP35247 375 aa13.75□□□□□ -0.21
NUP88-207ENST00000573584 GRB2P62993 217 aaKnown RBP13.75□□□□□ -0.21
NUP88-207ENST00000573584 RAB30Q15771 203 aa13.75□□□□□ -0.21
NUP88-207ENST00000573584 IAH1Q2TAA2 248 aaPredicted RBP13.75□□□□□ -0.21
NUP88-207ENST00000573584 AVPI1Q5T686 147 aa13.75□□□□□ -0.21
NUP88-207ENST00000573584 ADPRHL1Q8NDY3 354 aa13.75□□□□□ -0.21
NUP88-207ENST00000573584 OR10G3Q8NGC4 313 aa13.75□□□□□ -0.21
NUP88-207ENST00000573584 CMSS1Q9BQ75 279 aaKnown RBP13.75□□□□□ -0.21
NUP88-207ENST00000573584 PECRQ9BY49 303 aa13.75□□□□□ -0.21
NUP88-207ENST00000573584 SEMA5BQ9P283 1151 aa13.75□□□□□ -0.21
NUP88-207ENST00000573584 MEX3AA1L020 520 aaKnown RBP13.75□□□□□ -0.21
NUP88-207ENST00000573584 FBXO24O75426 580 aa13.75□□□□□ -0.21
NUP88-207ENST00000573584 IFNA2P01563 188 aa13.75□□□□□ -0.21
NUP88-207ENST00000573584 RBMXP38159 391 aaKnown RBP13.75□□□□□ -0.21
NUP88-207ENST00000573584 OR2A2Q6IF42 318 aa13.75□□□□□ -0.21
NUP88-207ENST00000573584 SLC38A9Q8NBW4 561 aa13.75□□□□□ -0.21
NUP88-207ENST00000573584 ZNF775Q96BV0 537 aaPredicted RBP13.75□□□□□ -0.21
NUP88-207ENST00000573584 OXGR1Q96P68 337 aa13.75□□□□□ -0.21
NUP88-207ENST00000573584 ELL3Q9HB65 397 aaPredicted RBP13.75□□□□□ -0.21
NUP88-207ENST00000573584 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.75□□□□□ -0.21
NUP88-207ENST00000573584 ZNF701Q9NV72 531 aaPredicted RBP13.75□□□□□ -0.21
NUP88-207ENST00000573584 GHRLQ9UBU3 117 aa13.75□□□□□ -0.21
NUP88-207ENST00000573584 GLB1P16278 677 aa13.74□□□□□ -0.21
NUP88-207ENST00000573584 ADH6P28332 368 aa13.74□□□□□ -0.21
NUP88-207ENST00000573584 RBM39Q14498 530 aaKnown RBP13.74□□□□□ -0.21
NUP88-207ENST00000573584 PEA15Q15121 130 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms