RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 CCDC54Q8NEL0 328 aa17.7■□□□□ 0.42
CLN3-230ENST00000568076 OR56B1Q8NGI3 324 aa17.7■□□□□ 0.42
CLN3-230ENST00000568076 TMEM45BQ96B21 275 aa17.7■□□□□ 0.42
CLN3-230ENST00000568076 TMPRSS13Q9BYE2 586 aa17.7■□□□□ 0.42
CLN3-230ENST00000568076 ABI3Q9P2A4 366 aa17.7■□□□□ 0.42
CLN3-230ENST00000568076 GHRLQ9UBU3 117 aa17.7■□□□□ 0.42
CLN3-230ENST00000568076 B4GALT7Q9UBV7 327 aa17.7■□□□□ 0.42
CLN3-230ENST00000568076 FOXI3A8MTJ6 420 aaPredicted RBP17.69■□□□□ 0.42
CLN3-230ENST00000568076 F5H5P2 479 aa17.69■□□□□ 0.42
CLN3-230ENST00000568076 IGHV3-9P01782 118 aa17.69■□□□□ 0.42
CLN3-230ENST00000568076 TSPO2Q5TGU0 170 aa17.69■□□□□ 0.42
CLN3-230ENST00000568076 SEMA6DQ8NFY4 1073 aa17.69■□□□□ 0.42
CLN3-230ENST00000568076 REEP6Q96HR9 211 aa17.69■□□□□ 0.42
CLN3-230ENST00000568076 URM1Q9BTM9 101 aaKnown RBP17.69■□□□□ 0.42
CLN3-230ENST00000568076 OR2H1Q9GZK4 316 aa17.69■□□□□ 0.42
CLN3-230ENST00000568076 CST11Q9H112 138 aa17.69■□□□□ 0.42
CLN3-230ENST00000568076 SLC6A15Q9H2J7 730 aa17.69■□□□□ 0.42
CLN3-230ENST00000568076 GPR173Q9NS66 373 aa17.69■□□□□ 0.42
CLN3-230ENST00000568076 TIMM10BQ9Y5J6 103 aa17.69■□□□□ 0.42
CLN3-230ENST00000568076 KNTC1P50748 2209 aa17.68■□□□□ 0.42
CLN3-230ENST00000568076 IGKV3D-15A0A087WSY6 115 aa17.68■□□□□ 0.42
CLN3-230ENST00000568076 OR2AT4A6NND4 320 aa17.68■□□□□ 0.42
CLN3-230ENST00000568076 SLC22A5O76082 557 aa17.68■□□□□ 0.42
CLN3-230ENST00000568076 PMP2P02689 132 aa17.68■□□□□ 0.42
CLN3-230ENST00000568076 LIPCP11150 499 aa17.68■□□□□ 0.42
CLN3-230ENST00000568076 HTR5AP47898 357 aa17.68■□□□□ 0.42
CLN3-230ENST00000568076 DHRS2Q13268 280 aa17.68■□□□□ 0.42
CLN3-230ENST00000568076 MPPED2Q15777 294 aa17.68■□□□□ 0.42
CLN3-230ENST00000568076 LY6G6FQ5SQ64 297 aa17.68■□□□□ 0.42
CLN3-230ENST00000568076 SLC16A14Q7RTX9 510 aa17.68■□□□□ 0.42
CLN3-230ENST00000568076 C12orf45Q8N5I9 185 aaPredicted RBP17.68■□□□□ 0.42
CLN3-230ENST00000568076 ELMOD3Q96FG2 381 aa17.68■□□□□ 0.42
CLN3-230ENST00000568076 PLEKHA6Q9Y2H5 1048 aa17.68■□□□□ 0.42
CLN3-230ENST00000568076 CFDP00746 253 aaPredicted RBP17.68■□□□□ 0.42
CLN3-230ENST00000568076 LCATP04180 440 aa17.68■□□□□ 0.42
CLN3-230ENST00000568076 MGMTP16455 207 aa17.68■□□□□ 0.42
CLN3-230ENST00000568076 NAT1P18440 290 aa17.68■□□□□ 0.42
CLN3-230ENST00000568076 SPEM2Q0P670 501 aa17.68■□□□□ 0.42
CLN3-230ENST00000568076 ZMYND11Q15326 602 aa17.68■□□□□ 0.42
CLN3-230ENST00000568076 TMEM251Q8N6I4 163 aa17.68■□□□□ 0.42
CLN3-230ENST00000568076 OR51T1Q8NGJ9 327 aa17.68■□□□□ 0.42
CLN3-230ENST00000568076 FN3KRPQ9HA64 309 aa17.68■□□□□ 0.42
CLN3-230ENST00000568076 NOSIPQ9Y314 301 aaKnown RBP17.68■□□□□ 0.42
CLN3-230ENST00000568076 ZNF708P17019 499 aa17.67■□□□□ 0.42
CLN3-230ENST00000568076 TBPP20226 339 aa17.67■□□□□ 0.42
CLN3-230ENST00000568076 SERPINA2P20848 420 aa17.67■□□□□ 0.42
CLN3-230ENST00000568076 PNLIPRP3Q17RR3 467 aa17.67■□□□□ 0.42
CLN3-230ENST00000568076 MICBQ29980 383 aa17.67■□□□□ 0.42
CLN3-230ENST00000568076 SLC25A42Q86VD7 318 aa17.67■□□□□ 0.42
CLN3-230ENST00000568076 OR4K15Q8NH41 348 aa17.67■□□□□ 0.42
CLN3-230ENST00000568076 MED13Q9UHV7 2174 aa17.67■□□□□ 0.42
CLN3-230ENST00000568076 DHRS7CA6NNS2 312 aa17.66■□□□□ 0.42
CLN3-230ENST00000568076 MCRIP1C9JLW8 97 aa17.66■□□□□ 0.42
CLN3-230ENST00000568076 MMP7P09237 267 aaPredicted RBP17.66■□□□□ 0.42
CLN3-230ENST00000568076 NFYAP23511 347 aaPredicted RBP17.66■□□□□ 0.42
CLN3-230ENST00000568076 EXOSC2Q13868 293 aaKnown RBP17.66■□□□□ 0.42
CLN3-230ENST00000568076 FAM189A2Q15884 450 aa17.66■□□□□ 0.42
CLN3-230ENST00000568076 ATP1A1-AS1Q5TC04 95 aa17.66■□□□□ 0.42
CLN3-230ENST00000568076 ZDHHC22Q8N966 263 aa17.66■□□□□ 0.42
CLN3-230ENST00000568076 FBXW5Q969U6 566 aa17.66■□□□□ 0.42
CLN3-230ENST00000568076 CELSR3Q9NYQ7 3312 aa17.66■□□□□ 0.42
CLN3-230ENST00000568076 MRPL33O75394 65 aaKnown RBP17.66■□□□□ 0.42
CLN3-230ENST00000568076 HLA-AP01891 365 aaKnown RBP17.66■□□□□ 0.42
CLN3-230ENST00000568076 OPCMLQ14982 345 aa17.66■□□□□ 0.42
CLN3-230ENST00000568076 C11orf88Q6PI97 169 aa17.66■□□□□ 0.42
CLN3-230ENST00000568076 GALNTL5Q7Z4T8 443 aa17.66■□□□□ 0.42
CLN3-230ENST00000568076 OCSTAMPQ9BR26 566 aa17.66■□□□□ 0.42
CLN3-230ENST00000568076 FAM117AQ9C073 453 aa17.66■□□□□ 0.42
CLN3-230ENST00000568076 CLEC4MQ9H2X3 399 aaPredicted RBP17.66■□□□□ 0.42
CLN3-230ENST00000568076 SLC7A10Q9NS82 523 aa17.66■□□□□ 0.42
CLN3-230ENST00000568076 B3GNT2Q9NY97 397 aa17.66■□□□□ 0.42
CLN3-230ENST00000568076 MYO7BQ6PIF6 2116 aa17.66■□□□□ 0.42
CLN3-230ENST00000568076 M0R233 179 aa17.65■□□□□ 0.42
CLN3-230ENST00000568076 ZBTB25P24278 435 aa17.65■□□□□ 0.42
CLN3-230ENST00000568076 PCBD1P61457 104 aa17.65■□□□□ 0.42
CLN3-230ENST00000568076 RIPPLY1Q0D2K3 151 aa17.65■□□□□ 0.42
CLN3-230ENST00000568076 TUSC5Q8IXB3 177 aa17.65■□□□□ 0.42
CLN3-230ENST00000568076 IL22RA1Q8N6P7 574 aa17.65■□□□□ 0.42
CLN3-230ENST00000568076 MDS2Q8NDY4 140 aa17.65■□□□□ 0.42
CLN3-230ENST00000568076 STEAP2Q8NFT2 490 aa17.65■□□□□ 0.42
CLN3-230ENST00000568076 TM2D1Q9BX74 207 aa17.65■□□□□ 0.42
CLN3-230ENST00000568076 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP17.65■□□□□ 0.42
CLN3-230ENST00000568076 KMT2EQ8IZD2 1858 aa17.65■□□□□ 0.42
CLN3-230ENST00000568076 IGKV1-27A0A075B6S5 117 aa17.64■□□□□ 0.41
CLN3-230ENST00000568076 L7N2F9 121 aa17.64■□□□□ 0.41
CLN3-230ENST00000568076 RGS11O94810 467 aa17.64■□□□□ 0.41
CLN3-230ENST00000568076 IFNA6P05013 189 aa17.64■□□□□ 0.41
CLN3-230ENST00000568076 SP1P08047 785 aa17.64■□□□□ 0.41
CLN3-230ENST00000568076 SEC61A1P61619 476 aaKnown RBP17.64■□□□□ 0.41
CLN3-230ENST00000568076 PPP1R1AQ13522 171 aa17.64■□□□□ 0.41
CLN3-230ENST00000568076 TRIP6Q15654 476 aaKnown RBP17.64■□□□□ 0.41
CLN3-230ENST00000568076 OR8H3Q8N146 312 aa17.64■□□□□ 0.41
CLN3-230ENST00000568076 FNDC9Q8TBE3 224 aa17.64■□□□□ 0.41
CLN3-230ENST00000568076 IP6K3Q96PC2 410 aa17.64■□□□□ 0.41
CLN3-230ENST00000568076 PECRQ9BY49 303 aa17.64■□□□□ 0.41
CLN3-230ENST00000568076 ELL3Q9HB65 397 aaPredicted RBP17.64■□□□□ 0.41
CLN3-230ENST00000568076 IL2RAP01589 272 aa17.64■□□□□ 0.41
CLN3-230ENST00000568076 BLVRBP30043 206 aaPredicted RBP17.64■□□□□ 0.41
CLN3-230ENST00000568076 MEOX1P50221 254 aa17.64■□□□□ 0.41
CLN3-230ENST00000568076 MTCP1P56278 107 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms