RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 ERVK-18Q9QC07 812 aa16.47■□□□□ 0.23
CLN3-225ENST00000566824 CAB39Q9Y376 341 aaPredicted RBP16.47■□□□□ 0.23
CLN3-225ENST00000566824 WIPI2Q9Y4P8 454 aa16.47■□□□□ 0.23
CLN3-225ENST00000566824 A0A1B0GVI7 797 aa16.46■□□□□ 0.23
CLN3-225ENST00000566824 SYT7O43581 403 aa16.46■□□□□ 0.23
CLN3-225ENST00000566824 GNALP38405 381 aa16.46■□□□□ 0.23
CLN3-225ENST00000566824 GATA4P43694 442 aa16.46■□□□□ 0.23
CLN3-225ENST00000566824 CCR9P51686 369 aa16.46■□□□□ 0.23
CLN3-225ENST00000566824 CEP78Q5JTW2 689 aa16.46■□□□□ 0.23
CLN3-225ENST00000566824 STX19Q8N4C7 294 aa16.46■□□□□ 0.23
CLN3-225ENST00000566824 KLHL36Q8N4N3 616 aa16.46■□□□□ 0.23
CLN3-225ENST00000566824 CELF2-AS1Q8N7Q2 184 aa16.46■□□□□ 0.23
CLN3-225ENST00000566824 OR8S1Q8NH09 359 aa16.46■□□□□ 0.23
CLN3-225ENST00000566824 MRPL48Q96GC5 212 aaKnown RBP16.46■□□□□ 0.23
CLN3-225ENST00000566824 CLDN25C9JDP6 229 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 TMEM178BH3BS89 294 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 ZFPL1O95159 310 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 CDK1P06493 297 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 ATP6V1B1P15313 513 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 FOSL1P15407 271 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 MYL12AP19105 171 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 GBX2P52951 348 aaPredicted RBP16.45■□□□□ 0.22
CLN3-225ENST00000566824 CSNK2BP67870 215 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 TMEM42Q69YG0 159 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 MOB3CQ70IA8 216 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 C19orf18Q8NEA5 215 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 CLDND2Q8NHS1 167 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 RGP1Q92546 391 aaPredicted RBP16.45■□□□□ 0.22
CLN3-225ENST00000566824 PDCD1LG2Q9BQ51 273 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 GPR173Q9NS66 373 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 MPC1Q9Y5U8 109 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 MALRD1Q5VYJ5 2156 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 MTRF1O75570 445 aaKnown RBP16.45■□□□□ 0.22
CLN3-225ENST00000566824 LY6G6DO95868 133 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 UBCP0CG48 685 aaKnown RBP16.45■□□□□ 0.22
CLN3-225ENST00000566824 TGM4P49221 684 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 SLC35A2P78381 396 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 ZMYND11Q15326 602 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 SNCBQ16143 134 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 TMPRSS11AQ6ZMR5 421 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 EGFL6Q8IUX8 553 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 ZDHHC23Q8IYP9 409 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 ZFP41Q8N8Y5 198 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 SPERTQ8NA61 448 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 OR1M1Q8NGA1 313 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 OR52N1Q8NH53 320 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 ADAT3Q96EY9 351 aaPredicted RBP16.45■□□□□ 0.22
CLN3-225ENST00000566824 DUSP21Q9H596 190 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 METTL17Q9H7H0 456 aaPredicted RBP16.45■□□□□ 0.22
CLN3-225ENST00000566824 C1orf123Q9NWV4 160 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 BABAM2Q9NXR7 383 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 ENPP5Q9UJA9 477 aa16.45■□□□□ 0.22
CLN3-225ENST00000566824 NOP16Q9Y3C1 178 aaKnown RBP16.45■□□□□ 0.22
CLN3-225ENST00000566824 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP16.44■□□□□ 0.22
CLN3-225ENST00000566824 IGHV2-70P01814 119 aa16.44■□□□□ 0.22
CLN3-225ENST00000566824 ISG15P05161 165 aa16.44■□□□□ 0.22
CLN3-225ENST00000566824 CCDC159P0C7I6 412 aa16.44■□□□□ 0.22
CLN3-225ENST00000566824 CRHBPP24387 322 aa16.44■□□□□ 0.22
CLN3-225ENST00000566824 LMO4P61968 165 aa16.44■□□□□ 0.22
CLN3-225ENST00000566824 ZNF154Q13106 437 aa16.44■□□□□ 0.22
CLN3-225ENST00000566824 TMEM249Q2WGJ8 235 aa16.44■□□□□ 0.22
CLN3-225ENST00000566824 ZBTB37Q5TC79 503 aa16.44■□□□□ 0.22
CLN3-225ENST00000566824 TMEM244Q5VVB8 128 aa16.44■□□□□ 0.22
CLN3-225ENST00000566824 Q71RC1 249 aaPredicted RBP16.44■□□□□ 0.22
CLN3-225ENST00000566824 ZNF676Q8N7Q3 588 aa16.44■□□□□ 0.22
CLN3-225ENST00000566824 NANOGP1Q8N7R0 232 aa16.44■□□□□ 0.22
CLN3-225ENST00000566824 Q8TCH9 128 aa16.44■□□□□ 0.22
CLN3-225ENST00000566824 RPS4Y2Q8TD47 263 aa16.44■□□□□ 0.22
CLN3-225ENST00000566824 RNF170Q96K19 258 aa16.44■□□□□ 0.22
CLN3-225ENST00000566824 MICU1Q9BPX6 476 aa16.44■□□□□ 0.22
CLN3-225ENST00000566824 C14orf119Q9NWQ9 140 aa16.44■□□□□ 0.22
CLN3-225ENST00000566824 NPTNQ9Y639 398 aa16.44■□□□□ 0.22
CLN3-225ENST00000566824 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.43■□□□□ 0.227e-9■■□□□ 13.5
CLN3-225ENST00000566824 TRBV2A0A0J9YWF9 115 aa16.43■□□□□ 0.22
CLN3-225ENST00000566824 DENRO43583 198 aaKnown RBP16.43■□□□□ 0.22
CLN3-225ENST00000566824 NRASP01111 189 aa16.43■□□□□ 0.22
CLN3-225ENST00000566824 MT-ND2P03891 347 aa16.43■□□□□ 0.22
CLN3-225ENST00000566824 IGHV4-31P0DP07 118 aa16.43■□□□□ 0.22
CLN3-225ENST00000566824 EGR1P18146 543 aa16.43■□□□□ 0.22
CLN3-225ENST00000566824 GPM6AP51674 278 aa16.43■□□□□ 0.22
CLN3-225ENST00000566824 IRF3Q14653 427 aa16.43■□□□□ 0.22
CLN3-225ENST00000566824 CDK5R1Q15078 307 aa16.43■□□□□ 0.22
CLN3-225ENST00000566824 UBE2V2Q15819 145 aa16.43■□□□□ 0.22
CLN3-225ENST00000566824 CLVS2Q5SYC1 327 aa16.43■□□□□ 0.22
CLN3-225ENST00000566824 PLCXD3Q63HM9 321 aa16.43■□□□□ 0.22
CLN3-225ENST00000566824 FTMTQ8N4E7 242 aa16.43■□□□□ 0.22
CLN3-225ENST00000566824 RPL3LQ92901 407 aaKnown RBP16.43■□□□□ 0.22
CLN3-225ENST00000566824 RAB1CQ92928 201 aa16.43■□□□□ 0.22
CLN3-225ENST00000566824 FGGYQ96C11 551 aa16.43■□□□□ 0.22
CLN3-225ENST00000566824 RTL8AQ9BWD3 113 aa16.43■□□□□ 0.22
CLN3-225ENST00000566824 FN3KRPQ9HA64 309 aa16.43■□□□□ 0.22
CLN3-225ENST00000566824 CHCHD3Q9NX63 227 aaKnown RBP16.43■□□□□ 0.22
CLN3-225ENST00000566824 SCN3BQ9NY72 215 aa16.43■□□□□ 0.22
CLN3-225ENST00000566824 ARHGAP32A7KAX9 2087 aa16.43■□□□□ 0.22
CLN3-225ENST00000566824 NSD1Q96L73 2696 aaPredicted RBP16.42■□□□□ 0.22
CLN3-225ENST00000566824 A6NLC8 198 aa16.42■□□□□ 0.22
CLN3-225ENST00000566824 ANXA2P2A6NMY6 339 aa16.42■□□□□ 0.22
CLN3-225ENST00000566824 DHRS7CA6NNS2 312 aa16.42■□□□□ 0.22
CLN3-225ENST00000566824 ZNF732B4DXR9 585 aa16.42■□□□□ 0.22
CLN3-225ENST00000566824 OGG1O15527 345 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms