RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 MPC1Q9Y5U8 109 aa14.08□□□□□ -0.16
CLN3-216ENST00000565316 PRKDCP78527 4128 aaKnown RBP14.08□□□□□ -0.16
CLN3-216ENST00000565316 ARRDC5A6NEK1 342 aa14.07□□□□□ -0.16
CLN3-216ENST00000565316 NDUFB3O43676 98 aa14.07□□□□□ -0.16
CLN3-216ENST00000565316 CST4P01036 141 aa14.07□□□□□ -0.16
CLN3-216ENST00000565316 H2BFMP0C1H6 154 aa14.07□□□□□ -0.16
CLN3-216ENST00000565316 ACKR3P25106 362 aa14.07□□□□□ -0.16
CLN3-216ENST00000565316 PROK1P58294 105 aa14.07□□□□□ -0.16
CLN3-216ENST00000565316 GNGT1P63211 74 aa14.07□□□□□ -0.16
CLN3-216ENST00000565316 PDZD9Q8IXQ8 264 aa14.07□□□□□ -0.16
CLN3-216ENST00000565316 CMTM4Q8IZR5 234 aa14.07□□□□□ -0.16
CLN3-216ENST00000565316 Q8N7P7 452 aa14.07□□□□□ -0.16
CLN3-216ENST00000565316 ZNF454Q8N9F8 522 aa14.07□□□□□ -0.16
CLN3-216ENST00000565316 ZSCAN4Q8NAM6 433 aaPredicted RBP14.07□□□□□ -0.16
CLN3-216ENST00000565316 OTOSQ8NHW6 89 aa14.07□□□□□ -0.16
CLN3-216ENST00000565316 GIPC3Q8TF64 312 aa14.07□□□□□ -0.16
CLN3-216ENST00000565316 OR5P3Q8WZ94 311 aa14.07□□□□□ -0.16
CLN3-216ENST00000565316 PGAM5Q96HS1 289 aa14.07□□□□□ -0.16
CLN3-216ENST00000565316 RAB3IPQ96QF0 476 aaPredicted RBP14.07□□□□□ -0.16
CLN3-216ENST00000565316 DCTN5Q9BTE1 182 aa14.07□□□□□ -0.16
CLN3-216ENST00000565316 DPAGT1Q9H3H5 408 aa14.07□□□□□ -0.16
CLN3-216ENST00000565316 ABCB9Q9NP78 766 aa14.07□□□□□ -0.16
CLN3-216ENST00000565316 ONECUT1Q9UBC0 465 aa14.07□□□□□ -0.16
CLN3-216ENST00000565316 TMEM210A6NLX4 147 aa14.06□□□□□ -0.16
CLN3-216ENST00000565316 ANXA2P2A6NMY6 339 aa14.06□□□□□ -0.16
CLN3-216ENST00000565316 RAP2AP10114 183 aa14.06□□□□□ -0.16
CLN3-216ENST00000565316 GYS2P54840 703 aa14.06□□□□□ -0.16
CLN3-216ENST00000565316 GFOD2Q3B7J2 385 aa14.06□□□□□ -0.16
CLN3-216ENST00000565316 MIDNQ504T8 468 aa14.06□□□□□ -0.16
CLN3-216ENST00000565316 LRRC10Q5BKY1 277 aa14.06□□□□□ -0.16
CLN3-216ENST00000565316 ASPHD2Q6ICH7 369 aa14.06□□□□□ -0.16
CLN3-216ENST00000565316 GDPGP1Q6ZNW5 385 aa14.06□□□□□ -0.16
CLN3-216ENST00000565316 C1orf122Q6ZSJ8 110 aa14.06□□□□□ -0.16
CLN3-216ENST00000565316 KRT74Q7RTS7 529 aa14.06□□□□□ -0.16
CLN3-216ENST00000565316 TNFRSF14Q92956 283 aa14.06□□□□□ -0.16
CLN3-216ENST00000565316 NSL1Q96IY1 281 aa14.06□□□□□ -0.16
CLN3-216ENST00000565316 RTL8AQ9BWD3 113 aa14.06□□□□□ -0.16
CLN3-216ENST00000565316 FGF23Q9GZV9 251 aaPredicted RBP14.06□□□□□ -0.16
CLN3-216ENST00000565316 WDR13Q9H1Z4 485 aa14.06□□□□□ -0.16
CLN3-216ENST00000565316 BRD7Q9NPI1 651 aa14.06□□□□□ -0.16
CLN3-216ENST00000565316 FAM96BQ9Y3D0 163 aa14.06□□□□□ -0.16
CLN3-216ENST00000565316 RNASEK-C17orf49H0YIS7 233 aa14.05□□□□□ -0.16
CLN3-216ENST00000565316 H3BN98 237 aa14.05□□□□□ -0.16
CLN3-216ENST00000565316 M0QZ24 198 aa14.05□□□□□ -0.16
CLN3-216ENST00000565316 TIMM23O14925 209 aa14.05□□□□□ -0.16
CLN3-216ENST00000565316 LYNP07948 512 aa14.05□□□□□ -0.16
CLN3-216ENST00000565316 FBP1P09467 338 aa14.05□□□□□ -0.16
CLN3-216ENST00000565316 PAICSP22234 425 aaKnown RBP14.05□□□□□ -0.16
CLN3-216ENST00000565316 DCTDP32321 178 aa14.05□□□□□ -0.16
CLN3-216ENST00000565316 GUCA2AQ02747 115 aa14.05□□□□□ -0.16
CLN3-216ENST00000565316 PRDX4Q13162 271 aa14.05□□□□□ -0.16
CLN3-216ENST00000565316 IKZF1Q13422 519 aa14.05□□□□□ -0.16
CLN3-216ENST00000565316 TAF9Q16594 264 aa14.05□□□□□ -0.16
CLN3-216ENST00000565316 ZNF788Q6ZQV5 615 aa14.05□□□□□ -0.16
CLN3-216ENST00000565316 OR5T2Q8NGG2 359 aa14.05□□□□□ -0.16
CLN3-216ENST00000565316 ANGPTL6Q8NI99 470 aa14.05□□□□□ -0.16
CLN3-216ENST00000565316 LRTOMTQ8WZ04 291 aa14.05□□□□□ -0.16
CLN3-216ENST00000565316 RPL3LQ92901 407 aaKnown RBP14.05□□□□□ -0.16
CLN3-216ENST00000565316 OTULINQ96BN8 352 aa14.05□□□□□ -0.16
CLN3-216ENST00000565316 LYZL4Q96KX0 146 aa14.05□□□□□ -0.16
CLN3-216ENST00000565316 CCT8L2Q96SF2 557 aa14.05□□□□□ -0.16
CLN3-216ENST00000565316 OR51V1Q9H2C8 321 aa14.05□□□□□ -0.16
CLN3-216ENST00000565316 MMP27Q9H306 513 aa14.05□□□□□ -0.16
CLN3-216ENST00000565316 C16orf95Q9H693 158 aa14.05□□□□□ -0.16
CLN3-216ENST00000565316 ZNRD1Q9P1U0 126 aa14.05□□□□□ -0.16
CLN3-216ENST00000565316 ZNF391Q9UJN7 358 aa14.05□□□□□ -0.16
CLN3-216ENST00000565316 CAB39Q9Y376 341 aaPredicted RBP14.05□□□□□ -0.16
CLN3-216ENST00000565316 ZNF850A8MQ14 1090 aa14.04□□□□□ -0.16
CLN3-216ENST00000565316 SELENOFO60613 162 aa14.04□□□□□ -0.16
CLN3-216ENST00000565316 SELLP14151 372 aa14.04□□□□□ -0.16
CLN3-216ENST00000565316 GINS1Q14691 196 aa14.04□□□□□ -0.16
CLN3-216ENST00000565316 Q6ZSV7 163 aa14.04□□□□□ -0.16
CLN3-216ENST00000565316 HIST2H2ABQ8IUE6 130 aaPredicted RBP14.04□□□□□ -0.16
CLN3-216ENST00000565316 HPSE2Q8WWQ2 592 aa14.04□□□□□ -0.16
CLN3-216ENST00000565316 MED30Q96HR3 178 aa14.04□□□□□ -0.16
CLN3-216ENST00000565316 GAFA1Q96PS6 74 aa14.04□□□□□ -0.16
CLN3-216ENST00000565316 PKP2Q99959 881 aa14.04□□□□□ -0.16
CLN3-216ENST00000565316 RBM4BQ9BQ04 359 aaKnown RBP14.04□□□□□ -0.16
CLN3-216ENST00000565316 CHID1Q9BWS9 393 aa14.04□□□□□ -0.16
CLN3-216ENST00000565316 SEMA6AQ9H2E6 1030 aa14.04□□□□□ -0.16
CLN3-216ENST00000565316 NIPAL2Q9H841 368 aa14.04□□□□□ -0.16
CLN3-216ENST00000565316 SIRT7Q9NRC8 400 aa14.04□□□□□ -0.16
CLN3-216ENST00000565316 DNAJB11Q9UBS4 358 aa14.04□□□□□ -0.16
CLN3-216ENST00000565316 PRR23D1E9PI22 279 aaPredicted RBP14.03□□□□□ -0.16
CLN3-216ENST00000565316 NPFFO15130 113 aa14.03□□□□□ -0.16
CLN3-216ENST00000565316 SIGLEC5O15389 551 aa14.03□□□□□ -0.16
CLN3-216ENST00000565316 PRODHO43272 600 aa14.03□□□□□ -0.16
CLN3-216ENST00000565316 ACAA1P09110 424 aaPredicted RBP14.03□□□□□ -0.16
CLN3-216ENST00000565316 PRR23D2P0DMB1 279 aaPredicted RBP14.03□□□□□ -0.16
CLN3-216ENST00000565316 EEF1B2P24534 225 aaKnown RBP14.03□□□□□ -0.16
CLN3-216ENST00000565316 CAV3P56539 151 aa14.03□□□□□ -0.16
CLN3-216ENST00000565316 PSMA6P60900 246 aaKnown RBP14.03□□□□□ -0.16
CLN3-216ENST00000565316 DGUOKQ16854 277 aa14.03□□□□□ -0.16
CLN3-216ENST00000565316 PLBD1Q6P4A8 553 aa14.03□□□□□ -0.16
CLN3-216ENST00000565316 TMEM179BQ7Z7N9 219 aa14.03□□□□□ -0.16
CLN3-216ENST00000565316 ADGRG5Q8IZF4 528 aa14.03□□□□□ -0.16
CLN3-216ENST00000565316 OR8B12Q8NGG6 310 aa14.03□□□□□ -0.16
CLN3-216ENST00000565316 THEM6Q8WUY1 208 aa14.03□□□□□ -0.16
CLN3-216ENST00000565316 ITFG2Q969R8 447 aa14.03□□□□□ -0.16
CLN3-216ENST00000565316 ASB9Q96DX5 294 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms