RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 LAMP5Q9UJQ1 280 aa8.95□□□□□ -0.98
VPS39-208ENST00000564994 COPS3Q9UNS2 423 aa8.95□□□□□ -0.98
VPS39-208ENST00000564994 MPC1Q9Y5U8 109 aa8.95□□□□□ -0.98
VPS39-208ENST00000564994 CMYA5Q8N3K9 4069 aa8.95□□□□□ -0.98
VPS39-208ENST00000564994 MEGF8Q7Z7M0 2845 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 M0R129 80 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 P2RY10O00398 339 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 PRKYO43930 277 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 MITFO75030 526 aaPredicted RBP8.94□□□□□ -0.98
VPS39-208ENST00000564994 TFF1P04155 84 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 SELLP14151 372 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 MUC1P15941 1255 aaPredicted RBP8.94□□□□□ -0.98
VPS39-208ENST00000564994 EPHA2P29317 976 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 GMFBP60983 142 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 ARF6P62330 175 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 IL5RAQ01344 420 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 BNIP1Q12981 228 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 PTGES3Q15185 160 aaKnown RBP8.94□□□□□ -0.98
VPS39-208ENST00000564994 MICBQ29980 383 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 FAM76BQ5HYJ3 339 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 STUMQ69YW2 141 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 KRT74Q7RTS7 529 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 BCDIN3DQ7Z5W3 292 aaKnown RBP8.94□□□□□ -0.98
VPS39-208ENST00000564994 KRT77Q7Z794 578 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 FAM216BQ8N7L0 139 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 PNLDC1Q8NA58 520 aaKnown RBP8.94□□□□□ -0.98
VPS39-208ENST00000564994 SCCPDHQ8NBX0 429 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 OR5T2Q8NGG2 359 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 DNAJC9Q8WXX5 260 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 ST8SIA4Q92187 359 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 PIGCQ92535 297 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 PPP1R14AQ96A00 147 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 PKP2Q99959 881 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 RTL8AQ9BWD3 113 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 TTTY10Q9BZA0 68 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 YIPF3Q9GZM5 350 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 WDR13Q9H1Z4 485 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 NIPAL2Q9H841 368 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 SNTG1Q9NSN8 517 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 FAM206AQ9NX38 181 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 KIF17Q9P2E2 1029 aa8.94□□□□□ -0.98
VPS39-208ENST00000564994 RPUSD1Q9UJJ7 312 aaKnown RBP8.94□□□□□ -0.98
VPS39-208ENST00000564994 TMEM210A6NLX4 147 aa8.93□□□□□ -0.98
VPS39-208ENST00000564994 ANXA2P2A6NMY6 339 aa8.93□□□□□ -0.98
VPS39-208ENST00000564994 ECDO95905 644 aaPredicted RBP8.93□□□□□ -0.98
VPS39-208ENST00000564994 IGLV3-1P01715 115 aa8.93□□□□□ -0.98
VPS39-208ENST00000564994 DCTDP32321 178 aa8.93□□□□□ -0.98
VPS39-208ENST00000564994 TGM4P49221 684 aa8.93□□□□□ -0.98
VPS39-208ENST00000564994 BPIFB3P59826 476 aa8.93□□□□□ -0.98
VPS39-208ENST00000564994 EFNB1P98172 346 aa8.93□□□□□ -0.98
VPS39-208ENST00000564994 ROM1Q03395 351 aa8.93□□□□□ -0.98
VPS39-208ENST00000564994 SNCBQ16143 134 aa8.93□□□□□ -0.98
VPS39-208ENST00000564994 DMRTC1Q5HYR2 192 aa8.93□□□□□ -0.98
VPS39-208ENST00000564994 METTL11BQ5VVY1 283 aa8.93□□□□□ -0.98
VPS39-208ENST00000564994 C16orf87Q6PH81 154 aa8.93□□□□□ -0.98
VPS39-208ENST00000564994 DEGS2Q6QHC5 323 aa8.93□□□□□ -0.98
VPS39-208ENST00000564994 Q6YL49 198 aa8.93□□□□□ -0.98
VPS39-208ENST00000564994 ZDHHC23Q8IYP9 409 aa8.93□□□□□ -0.98
VPS39-208ENST00000564994 FTMTQ8N4E7 242 aa8.93□□□□□ -0.98
VPS39-208ENST00000564994 LY6G5BQ8NDX9 201 aa8.93□□□□□ -0.98
VPS39-208ENST00000564994 OR5K1Q8NHB7 308 aa8.93□□□□□ -0.98
VPS39-208ENST00000564994 LHX4Q969G2 390 aa8.93□□□□□ -0.98
VPS39-208ENST00000564994 ZDHHC16Q969W1 377 aa8.93□□□□□ -0.98
VPS39-208ENST00000564994 C12orf43Q96C57 262 aaKnown RBP8.93□□□□□ -0.98
VPS39-208ENST00000564994 RNF170Q96K19 258 aa8.93□□□□□ -0.98
VPS39-208ENST00000564994 OR8B4Q96RC9 309 aa8.93□□□□□ -0.98
VPS39-208ENST00000564994 TEX12Q9BXU0 123 aa8.93□□□□□ -0.98
VPS39-208ENST00000564994 CNTD2Q9H8S5 307 aa8.93□□□□□ -0.98
VPS39-208ENST00000564994 UNKLQ9H9P5 680 aaKnown RBP8.93□□□□□ -0.98
VPS39-208ENST00000564994 TNFRSF19Q9NS68 423 aa8.93□□□□□ -0.98
VPS39-208ENST00000564994 HAO2Q9NYQ3 351 aa8.93□□□□□ -0.98
VPS39-208ENST00000564994 ZNF391Q9UJN7 358 aa8.93□□□□□ -0.98
VPS39-208ENST00000564994 IGHV1-69DA0A0B4J2H0 117 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 A0A0U1RQV5 110 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 TMEM269A0A1B0GVZ9 245 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 ZAR1LA6NP61 321 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 MAGEB4O15481 346 aaPredicted RBP8.92□□□□□ -0.98
VPS39-208ENST00000564994 AKR7A2O43488 359 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 SRSF10O75494 262 aaKnown RBP8.92□□□□□ -0.98
VPS39-208ENST00000564994 RHBDL1O75783 438 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 IGHV1-69P01742 117 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 MELTFP08582 738 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 OMGP23515 440 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 ESRRGP62508 458 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 PRB3Q04118 309 aaPredicted RBP8.92□□□□□ -0.98
VPS39-208ENST00000564994 MFGE8Q08431 387 aaPredicted RBP8.92□□□□□ -0.98
VPS39-208ENST00000564994 IKZF1Q13422 519 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 PDCD1Q15116 288 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 ATP6AP1Q15904 470 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 C11orf91Q3C1V1 193 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 CDONQ4KMG0 1287 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 CEP78Q5JTW2 689 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 ATPAF1Q5TC12 328 aaPredicted RBP8.92□□□□□ -0.98
VPS39-208ENST00000564994 AADACL4Q5VUY2 407 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 SLX4IPQ5VYV7 408 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 C12orf73Q69YU5 71 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 KCTD18Q6PI47 426 aaPredicted RBP8.92□□□□□ -0.98
VPS39-208ENST00000564994 KCTD8Q6ZWB6 473 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 MEPCEQ7L2J0 689 aaKnown RBP8.92□□□□□ -0.98
VPS39-208ENST00000564994 PDZD9Q8IXQ8 264 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms