RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 NRF1Q16656 503 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 LAMTOR1Q6IAA8 161 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 PAMR1Q6UXH9 720 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 CASP12Q6UXS9 341 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 FBXW12Q6X9E4 464 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 ZNF720Q7Z2F6 126 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 RBM23Q86U06 439 aaKnown RBP4.4□□□□□ -1.71
VPS35-205ENST00000563984 TMEM173Q86WV6 379 aaPredicted RBP4.4□□□□□ -1.71
VPS35-205ENST00000563984 MEX3DQ86XN8 651 aaKnown RBP4.4□□□□□ -1.71
VPS35-205ENST00000563984 LRRC25Q8N386 305 aaPredicted RBP4.4□□□□□ -1.71
VPS35-205ENST00000563984 ARIH2OSQ8N7S6 290 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 CHST4Q8NCG5 386 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 OR5B3Q8NH48 314 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 SYNPRQ8TBG9 265 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 SLC7A13Q8TCU3 470 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 RXFP4Q8TDU9 374 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 EEF1AKMT1Q8WVE0 214 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 MAGOHBQ96A72 148 aaKnown RBP4.4□□□□□ -1.71
VPS35-205ENST00000563984 RPEQ96AT9 228 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 MALSU1Q96EH3 234 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 IMP4Q96G21 291 aaKnown RBP4.4□□□□□ -1.71
VPS35-205ENST00000563984 AURKBQ96GD4 344 aaPredicted RBP4.4□□□□□ -1.71
VPS35-205ENST00000563984 DCUN1D1Q96GG9 259 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 BTN2A3PQ96KV6 586 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 FEVQ99581 238 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 MARVELD1Q9BSK0 173 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 FAAP24Q9BTP7 215 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 RSPO3Q9BXY4 272 aaPredicted RBP4.4□□□□□ -1.71
VPS35-205ENST00000563984 PLAC1Q9HBJ0 212 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 BPIFA1Q9NP55 256 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 AMBNQ9NP70 447 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 GDF3Q9NR23 364 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 INPP5EQ9NRR6 644 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 BABAM1Q9NWV8 329 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 OR1A1Q9P1Q5 309 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 PSORS1C1Q9UIG5 152 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 HSPB8Q9UJY1 196 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 TRAPPC2LQ9UL33 140 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 ST3GAL6Q9Y274 331 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 DENND4BO75064 1496 aaPredicted RBP4.4□□□□□ -1.71
VPS35-205ENST00000563984 DOCK7Q96N67 2140 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 PTPRJQ12913 1337 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 IGSF9BQ9UPX0 1349 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 N4BP2Q86UW6 1770 aaPredicted RBP4.4□□□□□ -1.71
VPS35-205ENST00000563984 CFAP74Q9C0B2 1584 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 METP08581 1390 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 PREX1Q8TCU6 1659 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 MTCL1Q9Y4B5 1905 aaKnown RBP4.39□□□□□ -1.71
VPS35-205ENST00000563984 CDK12Q9NYV4 1490 aaPredicted RBP4.39□□□□□ -1.71
VPS35-205ENST00000563984 A0A1W2PPV9 198 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 RNF222A6NCQ9 220 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 ASPDHA6ND91 283 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 G3V4G9 280 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 K7EN84 100 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 DEGS1O15121 323 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 P2RX6O15547 441 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 CHST1O43916 411 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 MFSD11O43934 449 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 MPZL2O60487 215 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 CNMDO75829 334 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 HPRT1P00492 218 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 MT-ND4LP03901 98 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 ADRA2AP08913 450 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 ZSCAN5DPP0CG00 497 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 OR5H8P0DN80 308 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 ABOP16442 354 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 ZNF182P17025 639 aaPredicted RBP4.39□□□□□ -1.71
VPS35-205ENST00000563984 MYL9P24844 172 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 FGF9P31371 208 aaPredicted RBP4.39□□□□□ -1.71
VPS35-205ENST00000563984 CYP2J2P51589 502 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 DLX6P56179 175 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 RHOBP62745 196 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 POLR2LP62875 67 aaKnown RBP4.39□□□□□ -1.71
VPS35-205ENST00000563984 MFAP5Q13361 173 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 EIF2B1Q14232 305 aaKnown RBP4.39□□□□□ -1.71
VPS35-205ENST00000563984 GPR18Q14330 331 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 ZNF235Q14590 738 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 NECTIN1Q15223 517 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 GABRA6Q16445 453 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 SNRNP35Q16560 246 aaKnown RBP4.39□□□□□ -1.71
VPS35-205ENST00000563984 MESTQ5EB52 335 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 LDLRAD2Q5SZI1 272 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 CPTPQ5TA50 214 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 KDM4DQ6B0I6 523 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 LCTLQ6UWM7 567 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 WDR82Q6UXN9 313 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 FAM183BPQ6ZVS7 135 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 CHMP1BQ7LBR1 199 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 ASCL5Q7RTU5 278 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 TSEN54Q7Z6J9 526 aaKnown RBP4.39□□□□□ -1.71
VPS35-205ENST00000563984 TMEM139Q8IV31 216 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 SAMD12Q8N8I0 201 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 BPIFB6Q8NFQ5 453 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 TSTD1Q8NFU3 115 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 OR52B6Q8NGF0 335 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 OR8D4Q8NGM9 314 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 OR10G9Q8NGN4 311 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 ARRDC2Q8TBH0 407 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 SFXN5Q8TD22 340 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 TFB1MQ8WVM0 346 aaKnown RBP4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms