RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 GCM1Q9NP62 436 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 UFSP2Q9NUQ7 469 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 IL19Q9UHD0 177 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 NAV3Q8IVL0 2385 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 IGKV1-9A0A0C4DH69 117 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 IGHV1-69-2A0A0G2JMI3 117 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 ZNF816-ZNF321PA0A0X1KG74 233 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 A0A1B0GVI7 797 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 ANKRD61A6NGH8 418 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 ANKRD30BLA7E2S9 258 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 RNF223E7ERA6 249 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 MYL12BO14950 172 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 TPD52L2O43399 206 aaKnown RBP8.25□□□□□ -1.09
CLK3-208ENST00000562626 GMDSO60547 372 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 ZNF205O95201 554 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 PTBP3O95758 552 aaKnown RBP8.25□□□□□ -1.09
CLK3-208ENST00000562626 CYB5R3P00387 301 aaPredicted RBP8.25□□□□□ -1.09
CLK3-208ENST00000562626 UBCP0CG48 685 aaKnown RBP8.25□□□□□ -1.09
CLK3-208ENST00000562626 EGR1P18146 543 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 GIFP27352 417 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 DDOSTP39656 456 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 GABARAPL2P60520 117 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 SLC3A1Q07837 685 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 RIPPLY1Q0D2K3 151 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 MED21Q13503 144 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 INSL4Q14641 139 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 UBE2V2Q15819 145 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 ZMAT1Q5H9K5 638 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 SHEQ5VZ18 495 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 RPL22L1Q6P5R6 122 aaKnown RBP8.25□□□□□ -1.09
CLK3-208ENST00000562626 PRSS57Q6UWY2 283 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 SPNS3Q6ZMD2 512 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 TMPRSS11AQ6ZMR5 421 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 MOB3CQ70IA8 216 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 PRSS48Q7RTY5 328 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 ZNF676Q8N7Q3 588 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 C19orf18Q8NEA5 215 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 OR5P3Q8WZ94 311 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 FAM168AQ92567 244 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 RDH5Q92781 318 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 SMIM19Q96E16 107 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 BPESC1Q9GZL8 116 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 CCDC90BQ9GZT6 254 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 Q9H521 79 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 BARX1Q9HBU1 254 aaPredicted RBP8.25□□□□□ -1.09
CLK3-208ENST00000562626 DECR2Q9NUI1 292 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 ZNF391Q9UJN7 358 aa8.25□□□□□ -1.09
CLK3-208ENST00000562626 IGKV1-27A0A075B6S5 117 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 IGHV4-61A0A0C4DH41 118 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 TMEM212A6NML5 194 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 H7C1Q1 480 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 GRPP07492 148 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 ATP6V1B1P15313 513 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 PCMT1P22061 227 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 EEF1B2P24534 225 aaKnown RBP8.24□□□□□ -1.09
CLK3-208ENST00000562626 IL2RGP31785 369 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 GATA4P43694 442 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 SOX2P48431 317 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 PDLIM4P50479 330 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 EMX1Q04741 257 aaPredicted RBP8.24□□□□□ -1.09
CLK3-208ENST00000562626 ZNF154Q13106 437 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 MED22Q15528 200 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 CCDC58Q4VC31 144 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 ZBTB37Q5TC79 503 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 TMEM244Q5VVB8 128 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 EGFL6Q8IUX8 553 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 ZDHHC23Q8IYP9 409 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 SPARTQ8N0X7 666 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 OR1M1Q8NGA1 313 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 OR5AK2Q8NH90 309 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 NPRL2Q8WTW4 380 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 CCL17Q92583 94 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 GHSRQ92847 366 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 RPL3LQ92901 407 aaKnown RBP8.24□□□□□ -1.09
CLK3-208ENST00000562626 FGGYQ96C11 551 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 SEH1LQ96EE3 360 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 MRPL48Q96GC5 212 aaKnown RBP8.24□□□□□ -1.09
CLK3-208ENST00000562626 OPALINQ96PE5 141 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 DIRC2Q96SL1 478 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 NKX3-1Q99801 234 aaPredicted RBP8.24□□□□□ -1.09
CLK3-208ENST00000562626 MND1Q9BWT6 205 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 CHST5Q9GZS9 411 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 NARFLQ9H6Q4 476 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 ACOT13Q9NPJ3 140 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 TRIM36Q9NQ86 728 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 DLL4Q9NR61 685 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 CHCHD3Q9NX63 227 aaKnown RBP8.24□□□□□ -1.09
CLK3-208ENST00000562626 ENPP5Q9UJA9 477 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 FBXO9Q9UK97 447 aaPredicted RBP8.24□□□□□ -1.09
CLK3-208ENST00000562626 HHLA2Q9UM44 414 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 ERGIC3Q9Y282 383 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 MPC1Q9Y5U8 109 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 TLN2Q9Y4G6 2542 aa8.24□□□□□ -1.09
CLK3-208ENST00000562626 TRBV5-5A0A0J9YX44 114 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 LRP5LA4QPB2 252 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 MAGEA13PA6NCF6 341 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 DHRS7CA6NNS2 312 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 ZNF732B4DXR9 585 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 TMEM178BH3BS89 294 aa8.23□□□□□ -1.09
CLK3-208ENST00000562626 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms