RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 FAM168AQ92567 244 aa8.56□□□□□ -1.04
USP3-216ENST00000559873 UFD1Q92890 307 aa8.56□□□□□ -1.04
USP3-216ENST00000559873 PPP1R14AQ96A00 147 aa8.56□□□□□ -1.04
USP3-216ENST00000559873 CPNE2Q96FN4 548 aaPredicted RBP8.56□□□□□ -1.04
USP3-216ENST00000559873 TIMD4Q96H15 378 aa8.56□□□□□ -1.04
USP3-216ENST00000559873 PDCD1LG2Q9BQ51 273 aa8.56□□□□□ -1.04
USP3-216ENST00000559873 CHST5Q9GZS9 411 aa8.56□□□□□ -1.04
USP3-216ENST00000559873 CHODLQ9H9P2 273 aa8.56□□□□□ -1.04
USP3-216ENST00000559873 SLC7A11Q9UPY5 501 aa8.56□□□□□ -1.04
USP3-216ENST00000559873 PPP1R3CQ9UQK1 317 aa8.56□□□□□ -1.04
USP3-216ENST00000559873 RHBDD3Q9Y3P4 386 aa8.56□□□□□ -1.04
USP3-216ENST00000559873 CSMD2Q7Z408 3487 aa8.56□□□□□ -1.04
USP3-216ENST00000559873 CLDN25C9JDP6 229 aa8.55□□□□□ -1.04
USP3-216ENST00000559873 F5H5P2 479 aa8.55□□□□□ -1.04
USP3-216ENST00000559873 OGG1O15527 345 aa8.55□□□□□ -1.04
USP3-216ENST00000559873 PLPP2O43688 288 aa8.55□□□□□ -1.04
USP3-216ENST00000559873 LILRA1O75019 489 aa8.55□□□□□ -1.04
USP3-216ENST00000559873 NDUFS7O75251 213 aa8.55□□□□□ -1.04
USP3-216ENST00000559873 NRASP01111 189 aa8.55□□□□□ -1.04
USP3-216ENST00000559873 HSMCR30P0CW71 290 aa8.55□□□□□ -1.04
USP3-216ENST00000559873 SLC25A16P16260 332 aa8.55□□□□□ -1.04
USP3-216ENST00000559873 CELP19835 753 aa8.55□□□□□ -1.04
USP3-216ENST00000559873 PSMA1P25786 263 aaKnown RBP8.55□□□□□ -1.04
USP3-216ENST00000559873 MAPK3P27361 379 aaPredicted RBP8.55□□□□□ -1.04
USP3-216ENST00000559873 CRYBB2P43320 205 aa8.55□□□□□ -1.04
USP3-216ENST00000559873 TNK1Q13470 666 aa8.55□□□□□ -1.04
USP3-216ENST00000559873 GPR50Q13585 617 aa8.55□□□□□ -1.04
USP3-216ENST00000559873 DMKNQ6E0U4 476 aaPredicted RBP8.55□□□□□ -1.04
USP3-216ENST00000559873 XAF1Q6GPH4 301 aa8.55□□□□□ -1.04
USP3-216ENST00000559873 KCTD8Q6ZWB6 473 aa8.55□□□□□ -1.04
USP3-216ENST00000559873 MS4A15Q8N5U1 240 aa8.55□□□□□ -1.04
USP3-216ENST00000559873 ZNF525Q8N782 197 aa8.55□□□□□ -1.04
USP3-216ENST00000559873 RPS4Y2Q8TD47 263 aa8.55□□□□□ -1.04
USP3-216ENST00000559873 ITLN1Q8WWA0 313 aa8.55□□□□□ -1.04
USP3-216ENST00000559873 SGCDQ92629 289 aa8.55□□□□□ -1.04
USP3-216ENST00000559873 GHSRQ92847 366 aa8.55□□□□□ -1.04
USP3-216ENST00000559873 RNF166Q96A37 237 aaPredicted RBP8.55□□□□□ -1.04
USP3-216ENST00000559873 ITPKCQ96DU7 683 aa8.55□□□□□ -1.04
USP3-216ENST00000559873 MEGF10Q96KG7 1140 aa8.55□□□□□ -1.04
USP3-216ENST00000559873 SOX7Q9BT81 388 aa8.55□□□□□ -1.04
USP3-216ENST00000559873 FN3KRPQ9HA64 309 aa8.55□□□□□ -1.04
USP3-216ENST00000559873 ISYNA1Q9NPH2 558 aa8.55□□□□□ -1.04
USP3-216ENST00000559873 ACOT13Q9NPJ3 140 aa8.55□□□□□ -1.04
USP3-216ENST00000559873 ZNF275Q9NSD4 429 aaPredicted RBP8.55□□□□□ -1.04
USP3-216ENST00000559873 LSM2Q9Y333 95 aaKnown RBP8.55□□□□□ -1.04
USP3-216ENST00000559873 PRRC2AP48634 2157 aaKnown RBP8.54□□□□□ -1.04
USP3-216ENST00000559873 PNMA8CA0A1B0GUJ8 204 aa8.54□□□□□ -1.04
USP3-216ENST00000559873 A6NLC8 198 aa8.54□□□□□ -1.04
USP3-216ENST00000559873 H0YL77 283 aa8.54□□□□□ -1.04
USP3-216ENST00000559873 H3BSH0 61 aa8.54□□□□□ -1.04
USP3-216ENST00000559873 CDC14BO60729 498 aa8.54□□□□□ -1.04
USP3-216ENST00000559873 PTBP3O95758 552 aaKnown RBP8.54□□□□□ -1.04
USP3-216ENST00000559873 LALBAP00709 142 aa8.54□□□□□ -1.04
USP3-216ENST00000559873 PRKACBP22694 351 aa8.54□□□□□ -1.04
USP3-216ENST00000559873 GPR6P46095 362 aaPredicted RBP8.54□□□□□ -1.04
USP3-216ENST00000559873 PPP3R1P63098 170 aa8.54□□□□□ -1.04
USP3-216ENST00000559873 GNG3P63215 75 aa8.54□□□□□ -1.04
USP3-216ENST00000559873 TRAM1Q15629 374 aa8.54□□□□□ -1.04
USP3-216ENST00000559873 ZNF181Q2M3W8 571 aa8.54□□□□□ -1.04
USP3-216ENST00000559873 CEACAM21Q3KPI0 293 aa8.54□□□□□ -1.04
USP3-216ENST00000559873 Q499Y3 187 aa8.54□□□□□ -1.04
USP3-216ENST00000559873 TMEM42Q69YG0 159 aa8.54□□□□□ -1.04
USP3-216ENST00000559873 MOB3CQ70IA8 216 aa8.54□□□□□ -1.04
USP3-216ENST00000559873 UTS2BQ765I0 119 aa8.54□□□□□ -1.04
USP3-216ENST00000559873 RDH10Q8IZV5 341 aa8.54□□□□□ -1.04
USP3-216ENST00000559873 ZFP41Q8N8Y5 198 aa8.54□□□□□ -1.04
USP3-216ENST00000559873 OR5A2Q8NGI9 324 aa8.54□□□□□ -1.04
USP3-216ENST00000559873 OR5D14Q8NGL3 314 aa8.54□□□□□ -1.04
USP3-216ENST00000559873 OR5P3Q8WZ94 311 aa8.54□□□□□ -1.04
USP3-216ENST00000559873 CCL17Q92583 94 aa8.54□□□□□ -1.04
USP3-216ENST00000559873 RAB1CQ92928 201 aa8.54□□□□□ -1.04
USP3-216ENST00000559873 DVL3Q92997 716 aaPredicted RBP8.54□□□□□ -1.04
USP3-216ENST00000559873 TMEM106AQ96A25 262 aa8.54□□□□□ -1.04
USP3-216ENST00000559873 SPSB1Q96BD6 273 aa8.54□□□□□ -1.04
USP3-216ENST00000559873 RNF170Q96K19 258 aa8.54□□□□□ -1.04
USP3-216ENST00000559873 OR5M11Q96RB7 305 aa8.54□□□□□ -1.04
USP3-216ENST00000559873 NR1H4Q96RI1 486 aaPredicted RBP8.54□□□□□ -1.04
USP3-216ENST00000559873 CKLFQ9UBR5 152 aa8.54□□□□□ -1.04
USP3-216ENST00000559873 A0A087WXM4 84 aa8.53□□□□□ -1.04
USP3-216ENST00000559873 hCG_1807616A0A1W2PRN6 198 aa8.53□□□□□ -1.04
USP3-216ENST00000559873 LRP5LA4QPB2 252 aa8.53□□□□□ -1.04
USP3-216ENST00000559873 MAGEB3O15480 346 aa8.53□□□□□ -1.04
USP3-216ENST00000559873 LY6HO94772 140 aa8.53□□□□□ -1.04
USP3-216ENST00000559873 MAP2K4P45985 399 aa8.53□□□□□ -1.04
USP3-216ENST00000559873 TMEM33P57088 247 aa8.53□□□□□ -1.04
USP3-216ENST00000559873 MAB21L1Q13394 359 aa8.53□□□□□ -1.04
USP3-216ENST00000559873 CEP78Q5JTW2 689 aa8.53□□□□□ -1.04
USP3-216ENST00000559873 PRAMEF6Q5VXH4 476 aa8.53□□□□□ -1.04
USP3-216ENST00000559873 MOGAT3Q86VF5 341 aa8.53□□□□□ -1.04
USP3-216ENST00000559873 ZNF573Q86YE8 665 aa8.53□□□□□ -1.04
USP3-216ENST00000559873 SERPINA12Q8IW75 414 aa8.53□□□□□ -1.04
USP3-216ENST00000559873 SPARTQ8N0X7 666 aa8.53□□□□□ -1.04
USP3-216ENST00000559873 DNAAF1Q8NEP3 725 aa8.53□□□□□ -1.04
USP3-216ENST00000559873 OR51A4Q8NGJ6 313 aa8.53□□□□□ -1.04
USP3-216ENST00000559873 Q8TCH9 128 aa8.53□□□□□ -1.04
USP3-216ENST00000559873 C10orf105Q8TEF2 133 aa8.53□□□□□ -1.04
USP3-216ENST00000559873 HPSE2Q8WWQ2 592 aa8.53□□□□□ -1.04
USP3-216ENST00000559873 FGGYQ96C11 551 aa8.53□□□□□ -1.04
USP3-216ENST00000559873 BORCS8Q96FH0 119 aa8.53□□□□□ -1.04
USP3-216ENST00000559873 PGLYRP3Q96LB9 341 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms