RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 PSG4Q00888 419 aa9.28□□□□□ -0.92
CUX1-217ENST00000558836 DHRS2Q13268 280 aa9.28□□□□□ -0.92
CUX1-217ENST00000558836 ARFRP1Q13795 201 aa9.28□□□□□ -0.92
CUX1-217ENST00000558836 EXOSC2Q13868 293 aaKnown RBP9.28□□□□□ -0.92
CUX1-217ENST00000558836 SKA3Q8IX90 412 aa9.28□□□□□ -0.92
CUX1-217ENST00000558836 ADAD2Q8NCV1 583 aaKnown RBP9.28□□□□□ -0.92
CUX1-217ENST00000558836 OR2M7Q8NG81 312 aa9.28□□□□□ -0.92
CUX1-217ENST00000558836 CASTOR1Q8WTX7 329 aa9.28□□□□□ -0.92
CUX1-217ENST00000558836 SPTSSAQ969W0 71 aa9.28□□□□□ -0.92
CUX1-217ENST00000558836 PNPLA2Q96AD5 504 aa9.28□□□□□ -0.92
CUX1-217ENST00000558836 RADILQ96JH8 1075 aa9.28□□□□□ -0.92
CUX1-217ENST00000558836 CALHM2Q9HA72 323 aa9.28□□□□□ -0.92
CUX1-217ENST00000558836 TMEM38BQ9NVV0 291 aa9.28□□□□□ -0.92
CUX1-217ENST00000558836 CEP250Q9BV73 2442 aa9.28□□□□□ -0.92
CUX1-217ENST00000558836 PRR14LQ5THK1 2151 aa9.28□□□□□ -0.92
CUX1-217ENST00000558836 PTPRZ1P23471 2315 aaPredicted RBP9.28□□□□□ -0.92
CUX1-217ENST00000558836 SDCBPO00560 298 aaPredicted RBP9.28□□□□□ -0.92
CUX1-217ENST00000558836 CD74P04233 296 aa9.28□□□□□ -0.92
CUX1-217ENST00000558836 GABRR1P24046 479 aa9.28□□□□□ -0.92
CUX1-217ENST00000558836 CASRP41180 1078 aa9.28□□□□□ -0.92
CUX1-217ENST00000558836 SORDQ00796 357 aa9.28□□□□□ -0.92
CUX1-217ENST00000558836 BAMBIQ13145 260 aa9.28□□□□□ -0.92
CUX1-217ENST00000558836 TSPO2Q5TGU0 170 aa9.28□□□□□ -0.92
CUX1-217ENST00000558836 BRICD5Q6PL45 260 aa9.28□□□□□ -0.92
CUX1-217ENST00000558836 ZNF767PQ75MW2 155 aa9.28□□□□□ -0.92
CUX1-217ENST00000558836 SLC16A14Q7RTX9 510 aa9.28□□□□□ -0.92
CUX1-217ENST00000558836 GALNTL5Q7Z4T8 443 aa9.28□□□□□ -0.92
CUX1-217ENST00000558836 KCNG3Q8TAE7 436 aa9.28□□□□□ -0.92
CUX1-217ENST00000558836 FNDC9Q8TBE3 224 aa9.28□□□□□ -0.92
CUX1-217ENST00000558836 FOXB1Q99853 325 aa9.28□□□□□ -0.92
CUX1-217ENST00000558836 CST11Q9H112 138 aa9.28□□□□□ -0.92
CUX1-217ENST00000558836 PRR13Q9NZ81 148 aa9.28□□□□□ -0.92
CUX1-217ENST00000558836 ARPC4-TTLL3A0A0A6YYG9 625 aa9.27□□□□□ -0.92
CUX1-217ENST00000558836 A0A0A6YYH2 397 aa9.27□□□□□ -0.92
CUX1-217ENST00000558836 PLSCR5A0PG75 271 aa9.27□□□□□ -0.92
CUX1-217ENST00000558836 A6NJ64 397 aa9.27□□□□□ -0.92
CUX1-217ENST00000558836 FAM25EA8MYX2 175 aa9.27□□□□□ -0.92
CUX1-217ENST00000558836 M0R233 179 aa9.27□□□□□ -0.92
CUX1-217ENST00000558836 SYNGR3O43761 229 aa9.27□□□□□ -0.92
CUX1-217ENST00000558836 OR2A4O95047 310 aa9.27□□□□□ -0.92
CUX1-217ENST00000558836 GIPP09681 153 aaPredicted RBP9.27□□□□□ -0.92
CUX1-217ENST00000558836 NFYAP23511 347 aaPredicted RBP9.27□□□□□ -0.92
CUX1-217ENST00000558836 VAMP1P23763 118 aa9.27□□□□□ -0.92
CUX1-217ENST00000558836 CTSSP25774 331 aa9.27□□□□□ -0.92
CUX1-217ENST00000558836 SSBP1Q04837 148 aaKnown RBP9.27□□□□□ -0.92
CUX1-217ENST00000558836 ECH1Q13011 328 aa9.27□□□□□ -0.92
CUX1-217ENST00000558836 FAM209AQ5JX71 171 aa9.27□□□□□ -0.92
CUX1-217ENST00000558836 OR4K15Q8NH41 348 aa9.27□□□□□ -0.92
CUX1-217ENST00000558836 OR2A7Q96R45 310 aa9.27□□□□□ -0.92
CUX1-217ENST00000558836 SF3B5Q9BWJ5 86 aaKnown RBP9.27□□□□□ -0.92
CUX1-217ENST00000558836 CLEC4MQ9H2X3 399 aaPredicted RBP9.27□□□□□ -0.92
CUX1-217ENST00000558836 SLCO5A1Q9H2Y9 848 aa9.27□□□□□ -0.92
CUX1-217ENST00000558836 FN3KRPQ9HA64 309 aa9.27□□□□□ -0.92
CUX1-217ENST00000558836 ZNF224Q9NZL3 707 aa9.27□□□□□ -0.92
CUX1-217ENST00000558836 NOP16Q9Y3C1 178 aaKnown RBP9.27□□□□□ -0.92
CUX1-217ENST00000558836 ZNF292O60281 2723 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 DISC1C4P0D8 188 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 F5H5P2 479 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 IFNA6P05013 189 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 MGMTP16455 207 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 BLVRBP30043 206 aaPredicted RBP9.27□□□□□ -0.93
CUX1-217ENST00000558836 OTX1P32242 354 aaPredicted RBP9.27□□□□□ -0.93
CUX1-217ENST00000558836 NPY4RP50391 375 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 ZNF133P52736 654 aaPredicted RBP9.27□□□□□ -0.93
CUX1-217ENST00000558836 MTCP1P56278 107 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 HIST1H3AP68431 136 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 PPP1R1AQ13522 171 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 PDCD1Q15116 288 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 MICBQ29980 383 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 NKAPLQ5M9Q1 402 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 HIST2H3PS2Q5TEC6 136 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 FOXL2NBQ6ZUU3 175 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 HIST2H3AQ71DI3 136 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 TUSC5Q8IXB3 177 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 C12orf45Q8N5I9 185 aaPredicted RBP9.27□□□□□ -0.93
CUX1-217ENST00000558836 PNLDC1Q8NA58 520 aaKnown RBP9.27□□□□□ -0.93
CUX1-217ENST00000558836 OR1F12Q8NHA8 337 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 MARCH1Q8TCQ1 289 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 REEP6Q96HR9 211 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 BOKQ9UMX3 212 aaPredicted RBP9.27□□□□□ -0.93
CUX1-217ENST00000558836 L7N2F9 121 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 KCNAB3O43448 404 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 ZNF205O95201 554 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 HTR3BO95264 441 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 IGLV3-1P01715 115 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 TMEM225BP0DP42 221 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 HIST1H1DP16402 221 aaKnown RBP9.27□□□□□ -0.93
CUX1-217ENST00000558836 RAP2BP61225 183 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 SRSF6Q13247 344 aaKnown RBP9.27□□□□□ -0.93
CUX1-217ENST00000558836 OPCMLQ14982 345 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 KCTD9Q7L273 389 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 FAM219AQ8IW50 185 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 STEAP2Q8NFT2 490 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 ST8SIA4Q92187 359 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 FBXW5Q969U6 566 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 S100A13Q99584 98 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 SLC25A21Q9BQT8 299 aaPredicted RBP9.27□□□□□ -0.93
CUX1-217ENST00000558836 TTTY12Q9BZ98 90 aa9.27□□□□□ -0.93
CUX1-217ENST00000558836 ZNF703Q9H7S9 590 aaPredicted RBP9.27□□□□□ -0.93
CUX1-217ENST00000558836 GPR35Q9HC97 309 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms