RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 HLA-DOBP13765 273 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 CD36P16671 472 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 ALOX5APP20292 161 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 PTGS2P35354 604 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 NPBWR1P48145 328 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 SERPINB10P48595 397 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 TGM4P49221 684 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 STARP49675 285 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 RGS6P49758 472 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 CLDN20P56880 219 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 TGFBR3Q03167 851 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 SRYQ05066 204 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 HIST3H3Q16695 136 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 C2orf68Q2NKX9 166 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 LINC00303Q3SY05 128 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 C10orf128Q5T292 105 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 LINC01590Q5TEZ4 76 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 GPR107Q5VW38 600 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 XAF1Q6GPH4 301 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 SLC25A47Q6Q0C1 308 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 ZNF322Q6U7Q0 402 aaPredicted RBP4.46□□□□□ -1.7
LDLR-209ENST00000558528 Q6ZNX1 250 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 LINC00299Q6ZSB3 139 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 LHFPL3Q86UP9 236 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 SATL1Q86VE3 508 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 P2RY8Q86VZ1 359 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 ERI1Q8IV48 349 aaKnown RBP4.46□□□□□ -1.7
LDLR-209ENST00000558528 FAM219AQ8IW50 185 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 SERPINA12Q8IW75 414 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 CCDC36Q8IYA8 594 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 C20orf196Q8IYI0 205 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 CCDC54Q8NEL0 328 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 NOXO1Q8NFA2 376 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 KBTBD8Q8NFY9 601 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 OR4F15Q8NGB8 312 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 OR6N2Q8NGY6 317 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 OTOSQ8NHW6 89 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 THEM6Q8WUY1 208 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 MCHR2Q969V1 340 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 ZMYND19Q96E35 227 aaPredicted RBP4.46□□□□□ -1.7
LDLR-209ENST00000558528 GMPPAQ96IJ6 420 aaPredicted RBP4.46□□□□□ -1.7
LDLR-209ENST00000558528 Q96MF0 132 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 GPR137Q96N19 417 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 KLHDC3Q9BQ90 382 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 HES7Q9BYE0 225 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 ULBP2Q9BZM5 246 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 C1orf198Q9H425 327 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 RERGLQ9H628 205 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 ADGRL4Q9HBW9 690 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 MOV10Q9HCE1 1003 aaKnown RBP4.46□□□□□ -1.7
LDLR-209ENST00000558528 PAK1IP1Q9NWT1 392 aaPredicted RBP4.46□□□□□ -1.7
LDLR-209ENST00000558528 MED29Q9NX70 200 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 CISD1Q9NZ45 108 aaKnown RBP4.46□□□□□ -1.7
LDLR-209ENST00000558528 KLHL13Q9P2N7 655 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 UBQLN2Q9UHD9 624 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 GPR132Q9UNW8 380 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 FLVCR1Q9Y5Y0 555 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.46□□□□□ -1.7
LDLR-209ENST00000558528 CCDC168Q8NDH2 2452 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 FN1P02751 2386 aaKnown RBP4.46□□□□□ -1.7
LDLR-209ENST00000558528 NUP214P35658 2090 aaPredicted RBP4.45□□□□□ -1.7
LDLR-209ENST00000558528 IGLV1-36A0A0B4J1U3 117 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 A0A1W2PQL4 384 aaPredicted RBP4.45□□□□□ -1.7
LDLR-209ENST00000558528 CD8B2A6NJW9 211 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 SLC22A20A6NK97 555 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 ZNF716A6NP11 495 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 H3BSA7 217 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 RPL36A-HNRNPH2H7BZ11 118 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 J3QLW9 94 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 M0R129 80 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 PRRG2O14669 202 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 PLPP2O43688 288 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 AIREO43918 545 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 GATBO75879 557 aaKnown RBP4.45□□□□□ -1.7
LDLR-209ENST00000558528 PLAUP00749 431 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 PTHP01270 115 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 GYPBP06028 91 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 HTR1AP08908 422 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 LIMS3P0CW19 117 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 LIMS4P0CW20 117 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 CLUP10909 449 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 ZNF12P17014 697 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 ZNF19P17023 458 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 MSR1P21757 451 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 SHC1P29353 583 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 GABRA5P31644 462 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 PYCR1P32322 319 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 SOX6P35712 828 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 UGT2B10P36537 528 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 MAP2K4P45985 399 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 ETV1P50549 477 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 PSMD7P51665 324 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 RIDAP52758 137 aaKnown RBP4.45□□□□□ -1.7
LDLR-209ENST00000558528 GRB2P62993 217 aaKnown RBP4.45□□□□□ -1.7
LDLR-209ENST00000558528 SCRN3Q0VDG4 424 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 KLRB1Q12918 225 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 ECH1Q13011 328 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 TAF13Q15543 124 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 PCK2Q16822 640 aa4.45□□□□□ -1.7
LDLR-209ENST00000558528 DGUOKQ16854 277 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms