RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 CD8AP01732 235 aa8.19□□□□□ -1.1
CUX1-216ENST00000558469 RAF1P04049 648 aa8.19□□□□□ -1.1
CUX1-216ENST00000558469 UCHL1P09936 223 aa8.19□□□□□ -1.1
CUX1-216ENST00000558469 GALP22466 123 aa8.19□□□□□ -1.1
CUX1-216ENST00000558469 SSTR2P30874 369 aa8.19□□□□□ -1.1
CUX1-216ENST00000558469 ZNF81P51508 661 aa8.19□□□□□ -1.1
CUX1-216ENST00000558469 LSM3P62310 102 aaKnown RBP8.19□□□□□ -1.1
CUX1-216ENST00000558469 SNRPD2P62316 118 aaKnown RBP8.19□□□□□ -1.1
CUX1-216ENST00000558469 OR8G1Q15617 311 aa8.19□□□□□ -1.1
CUX1-216ENST00000558469 UBE2V2Q15819 145 aa8.19□□□□□ -1.1
CUX1-216ENST00000558469 TIMM50Q3ZCQ8 353 aa8.19□□□□□ -1.1
CUX1-216ENST00000558469 PLCXD3Q63HM9 321 aa8.19□□□□□ -1.1
CUX1-216ENST00000558469 TMEM42Q69YG0 159 aa8.19□□□□□ -1.1
CUX1-216ENST00000558469 C22orf42Q6IC83 251 aa8.19□□□□□ -1.1
CUX1-216ENST00000558469 PAMR1Q6UXH9 720 aa8.19□□□□□ -1.1
CUX1-216ENST00000558469 CLVS1Q8IUQ0 354 aaPredicted RBP8.19□□□□□ -1.1
CUX1-216ENST00000558469 ZCCHC24Q8N2G6 241 aaKnown RBP8.19□□□□□ -1.1
CUX1-216ENST00000558469 OR2Z1Q8NG97 314 aa8.19□□□□□ -1.1
CUX1-216ENST00000558469 OR10AD1Q8NGE0 317 aa8.19□□□□□ -1.1
CUX1-216ENST00000558469 OR8S1Q8NH09 359 aa8.19□□□□□ -1.1
CUX1-216ENST00000558469 PP6455Q8WZ26 134 aa8.19□□□□□ -1.1
CUX1-216ENST00000558469 PIGTQ969N2 578 aa8.19□□□□□ -1.1
CUX1-216ENST00000558469 HIST1H2AAQ96QV6 131 aa8.19□□□□□ -1.1
CUX1-216ENST00000558469 ADAT1Q9BUB4 502 aaKnown RBP8.19□□□□□ -1.1
CUX1-216ENST00000558469 CHST5Q9GZS9 411 aa8.19□□□□□ -1.1
CUX1-216ENST00000558469 NAA50Q9GZZ1 169 aaKnown RBP8.19□□□□□ -1.1
CUX1-216ENST00000558469 SLC22A4Q9H015 551 aa8.19□□□□□ -1.1
CUX1-216ENST00000558469 ZCCHC4Q9H5U6 513 aa8.19□□□□□ -1.1
CUX1-216ENST00000558469 RNF167Q9H6Y7 350 aa8.19□□□□□ -1.1
CUX1-216ENST00000558469 DYNLRB1Q9NP97 96 aa8.19□□□□□ -1.1
CUX1-216ENST00000558469 CYSLTR2Q9NS75 346 aa8.19□□□□□ -1.1
CUX1-216ENST00000558469 TAS2R4Q9NYW5 299 aa8.19□□□□□ -1.1
CUX1-216ENST00000558469 CKLFQ9UBR5 152 aa8.19□□□□□ -1.1
CUX1-216ENST00000558469 CGGBP1Q9UFW8 167 aaPredicted RBP8.19□□□□□ -1.1
CUX1-216ENST00000558469 LAMP3Q9UQV4 416 aa8.19□□□□□ -1.1
CUX1-216ENST00000558469 MPC1Q9Y5U8 109 aa8.19□□□□□ -1.1
CUX1-216ENST00000558469 TANC2Q9HCD6 1990 aa8.19□□□□□ -1.1
CUX1-216ENST00000558469 TRAV8-7A0A075B6U6 113 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 F5H5P2 479 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 MLNRO43193 412 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 SPRY3O43610 288 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 ARL6IP5O75915 188 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 MAS1P04201 325 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 OCMP0CE72 109 aaPredicted RBP8.18□□□□□ -1.1
CUX1-216ENST00000558469 SRMP19623 302 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 CALRP27797 417 aaKnown RBP8.18□□□□□ -1.1
CUX1-216ENST00000558469 FGF9P31371 208 aaPredicted RBP8.18□□□□□ -1.1
CUX1-216ENST00000558469 CEACAM21Q3KPI0 293 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 HSD17B12Q53GQ0 312 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 ASPHD2Q6ICH7 369 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 C20orf204Q6ZNR8 217 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 GDPGP1Q6ZNW5 385 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 SLC16A12Q6ZSM3 486 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 UTS2BQ765I0 119 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 KRT74Q7RTS7 529 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 DTX2Q86UW9 622 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 ANKRD13BQ86YJ7 626 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 ZDHHC23Q8IYP9 409 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 OR1M1Q8NGA1 313 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 OR13C9Q8NGT0 318 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 TRMT10AQ8TBZ6 339 aaKnown RBP8.18□□□□□ -1.1
CUX1-216ENST00000558469 UBASH3BQ8TF42 649 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 NPRL2Q8WTW4 380 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 PHYHIPQ92561 330 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 ELMOD3Q96FG2 381 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 VRK1Q99986 396 aaPredicted RBP8.18□□□□□ -1.1
CUX1-216ENST00000558469 CENPOQ9BU64 300 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 TRAF4Q9BUZ4 470 aaPredicted RBP8.18□□□□□ -1.1
CUX1-216ENST00000558469 TPK1Q9H3S4 243 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 MS4A5Q9H3V2 200 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 TCF7L1Q9HCS4 588 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 ZDHHC8Q9ULC8 765 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 FOXJ3Q9UPW0 622 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 GSTK1Q9Y2Q3 226 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 PMF1-BGLAPU3KQ54 211 aa8.18□□□□□ -1.1
CUX1-216ENST00000558469 AKAP6Q13023 2319 aa8.17□□□□□ -1.1
CUX1-216ENST00000558469 IGKV1-9A0A0C4DH69 117 aa8.17□□□□□ -1.1
CUX1-216ENST00000558469 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.17□□□□□ -1.1
CUX1-216ENST00000558469 IGHV3-64DA0A0J9YX35 117 aa8.17□□□□□ -1.1
CUX1-216ENST00000558469 A0A1B0GWJ7 208 aa8.17□□□□□ -1.1
CUX1-216ENST00000558469 FAM230AA0A1W2PPH8 454 aa8.17□□□□□ -1.1
CUX1-216ENST00000558469 ANXA2P2A6NMY6 339 aa8.17□□□□□ -1.1
CUX1-216ENST00000558469 C17orf100A8MU93 164 aa8.17□□□□□ -1.1
CUX1-216ENST00000558469 SULT1B1O43704 296 aa8.17□□□□□ -1.1
CUX1-216ENST00000558469 IGHV1-46P01743 117 aa8.17□□□□□ -1.1
CUX1-216ENST00000558469 HCKP08631 526 aa8.17□□□□□ -1.1
CUX1-216ENST00000558469 BMP4P12644 408 aa8.17□□□□□ -1.1
CUX1-216ENST00000558469 PRF1P14222 555 aa8.17□□□□□ -1.1
CUX1-216ENST00000558469 IGFBP3P17936 291 aaPredicted RBP8.17□□□□□ -1.1
CUX1-216ENST00000558469 ATF1P18846 271 aa8.17□□□□□ -1.1
CUX1-216ENST00000558469 FSTP19883 344 aa8.17□□□□□ -1.1
CUX1-216ENST00000558469 RAB3AP20336 220 aa8.17□□□□□ -1.1
CUX1-216ENST00000558469 AZGP1P25311 298 aaKnown RBP8.17□□□□□ -1.1
CUX1-216ENST00000558469 TGFBR1P36897 503 aa8.17□□□□□ -1.1
CUX1-216ENST00000558469 GPM6AP51674 278 aa8.17□□□□□ -1.1
CUX1-216ENST00000558469 KRTAP10-9P60411 292 aa8.17□□□□□ -1.1
CUX1-216ENST00000558469 VBP1P61758 197 aa8.17□□□□□ -1.1
CUX1-216ENST00000558469 PPP3R1P63098 170 aa8.17□□□□□ -1.1
CUX1-216ENST00000558469 TNFAIP6P98066 277 aaPredicted RBP8.17□□□□□ -1.1
CUX1-216ENST00000558469 CNN3Q15417 329 aaKnown RBP8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms