RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 LGALS14Q8TCE9 139 aa2.32□□□□□ -2.04
SCFD1-221ENST00000556534 TMEM234Q8WY98 164 aa2.32□□□□□ -2.04
SCFD1-221ENST00000556534 NARS2Q96I59 477 aaKnown RBP2.32□□□□□ -2.04
SCFD1-221ENST00000556534 FRMD8P1Q9BZ68 369 aaPredicted RBP2.32□□□□□ -2.04
SCFD1-221ENST00000556534 SYT4Q9H2B2 425 aa2.32□□□□□ -2.04
SCFD1-221ENST00000556534 MYOZ1Q9NP98 299 aaPredicted RBP2.32□□□□□ -2.04
SCFD1-221ENST00000556534 FAM49BQ9NUQ9 324 aa2.32□□□□□ -2.04
SCFD1-221ENST00000556534 CTSFQ9UBX1 484 aa2.32□□□□□ -2.04
SCFD1-221ENST00000556534 TRMT112Q9UI30 125 aaKnown RBP2.32□□□□□ -2.04
SCFD1-221ENST00000556534 KLF12Q9Y4X4 402 aa2.32□□□□□ -2.04
SCFD1-221ENST00000556534 TSSC4Q9Y5U2 329 aaPredicted RBP2.32□□□□□ -2.04
SCFD1-221ENST00000556534 GPR179Q6PRD1 2367 aa2.32□□□□□ -2.04
SCFD1-221ENST00000556534 COL27A1Q8IZC6 1860 aaPredicted RBP2.32□□□□□ -2.04
SCFD1-221ENST00000556534 TNS2Q63HR2 1409 aa2.32□□□□□ -2.04
SCFD1-221ENST00000556534 IGKV1-27A0A075B6S5 117 aa2.31□□□□□ -2.04
SCFD1-221ENST00000556534 ANKRD20A5PA0PJZ0 165 aa2.31□□□□□ -2.04
SCFD1-221ENST00000556534 OR6C74A6NCV1 312 aa2.31□□□□□ -2.04
SCFD1-221ENST00000556534 IQCF5A8MTL0 148 aa2.31□□□□□ -2.04
SCFD1-221ENST00000556534 LINC01619G3V211 115 aa2.31□□□□□ -2.04
SCFD1-221ENST00000556534 DNASE2O00115 360 aaPredicted RBP2.31□□□□□ -2.04
SCFD1-221ENST00000556534 PRMT5O14744 637 aaPredicted RBP2.31□□□□□ -2.04
SCFD1-221ENST00000556534 ALOX12BO75342 701 aa2.31□□□□□ -2.04
SCFD1-221ENST00000556534 GCM2O75603 506 aaPredicted RBP2.31□□□□□ -2.04
SCFD1-221ENST00000556534 SMC2O95347 1197 aa2.31□□□□□ -2.04
SCFD1-221ENST00000556534 LOXP28300 417 aaPredicted RBP2.31□□□□□ -2.04
SCFD1-221ENST00000556534 SSTR5P35346 364 aa2.31□□□□□ -2.04
SCFD1-221ENST00000556534 DEKP35659 375 aaKnown RBP2.31□□□□□ -2.04
SCFD1-221ENST00000556534 POLR2IP36954 125 aaKnown RBP2.31□□□□□ -2.04
SCFD1-221ENST00000556534 KCNJ3P48549 501 aa2.31□□□□□ -2.04
SCFD1-221ENST00000556534 SYNJ2BPP57105 145 aa2.31□□□□□ -2.04
SCFD1-221ENST00000556534 DYNC1I2Q13409 638 aaKnown RBP2.31□□□□□ -2.04
SCFD1-221ENST00000556534 TAL2Q16559 108 aa2.31□□□□□ -2.04
SCFD1-221ENST00000556534 AVPI1Q5T686 147 aa2.31□□□□□ -2.04
SCFD1-221ENST00000556534 NKAIN4Q8IVV8 208 aa2.31□□□□□ -2.04
SCFD1-221ENST00000556534 OSR2Q8N2R0 312 aa2.31□□□□□ -2.04
SCFD1-221ENST00000556534 OR6N2Q8NGY6 317 aa2.31□□□□□ -2.04
SCFD1-221ENST00000556534 PHF10Q8WUB8 498 aaKnown RBP2.31□□□□□ -2.04
SCFD1-221ENST00000556534 C15orf40Q8WUR7 153 aa2.31□□□□□ -2.04
SCFD1-221ENST00000556534 DCPSQ96C86 337 aaKnown RBP2.31□□□□□ -2.04
SCFD1-221ENST00000556534 HAUS1Q96CS2 278 aa2.31□□□□□ -2.04
SCFD1-221ENST00000556534 L3HYPDHQ96EM0 354 aa2.31□□□□□ -2.04
SCFD1-221ENST00000556534 ATP6V1G3Q96LB4 118 aa2.31□□□□□ -2.04
SCFD1-221ENST00000556534 ZNF382Q96SR6 550 aa2.31□□□□□ -2.04
SCFD1-221ENST00000556534 TIMM17AQ99595 171 aa2.31□□□□□ -2.04
SCFD1-221ENST00000556534 KCNS3Q9BQ31 491 aa2.31□□□□□ -2.04
SCFD1-221ENST00000556534 OR51B5Q9H339 312 aa2.31□□□□□ -2.04
SCFD1-221ENST00000556534 TMEM27Q9HBJ8 222 aa2.31□□□□□ -2.04
SCFD1-221ENST00000556534 NRBP2Q9NSY0 501 aa2.31□□□□□ -2.04
SCFD1-221ENST00000556534 RMND1Q9NWS8 449 aa2.31□□□□□ -2.04
SCFD1-221ENST00000556534 PTPRTO14522 1441 aa2.31□□□□□ -2.04
SCFD1-221ENST00000556534 ADAMTS13Q76LX8 1427 aa2.31□□□□□ -2.04
SCFD1-221ENST00000556534 IGHV1-69DA0A0B4J2H0 117 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 A0A0U1RQV1 116 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 A0A1B0GW15 77 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 MGAT4DA6NG13 374 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 E7EWF7 191 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 POLR3GO15318 223 aaPredicted RBP2.3□□□□□ -2.04
SCFD1-221ENST00000556534 SEMA3DO95025 777 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 CST4P01036 141 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 RHOCP08134 193 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 CD9P21926 228 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 MYL9P24844 172 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 ARL2P36404 184 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 KIR3DL2P43630 455 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 GALR1P47211 349 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 GFERP55789 205 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 MLF1P58340 268 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 TAS2R46P59540 309 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 C2orf80Q0P641 193 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 ZNF816Q0VGE8 651 aaPredicted RBP2.3□□□□□ -2.04
SCFD1-221ENST00000556534 ST3GAL4Q11206 333 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 CDC20Q12834 499 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 STX3Q13277 289 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 IRF4Q15306 451 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 RBMY1FQ15415 496 aaKnown RBP2.3□□□□□ -2.04
SCFD1-221ENST00000556534 OR1Q1Q15612 314 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 PRR9Q5T870 116 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 KDM4DQ6B0I6 523 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 BHLHA15Q7RTS1 189 aaPredicted RBP2.3□□□□□ -2.04
SCFD1-221ENST00000556534 LRRC8AQ8IWT6 810 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 SYCE1Q8N0S2 351 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 CDKL2Q92772 493 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 RNF5Q99942 180 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 C20orf144Q9BQM9 153 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 ACBD6Q9BR61 282 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 ARV1Q9H2C2 271 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 TREX1Q9NSU2 369 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 MRM2Q9UI43 246 aaKnown RBP2.3□□□□□ -2.04
SCFD1-221ENST00000556534 VAX2Q9UIW0 290 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 NXT1Q9UKK6 140 aaKnown RBP2.3□□□□□ -2.04
SCFD1-221ENST00000556534 MAP3K19Q56UN5 1328 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 YEATS2Q9ULM3 1422 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 SIGLEC1Q9BZZ2 1709 aa2.3□□□□□ -2.04
SCFD1-221ENST00000556534 IGLV3-12A0A075B6K2 115 aa2.29□□□□□ -2.04
SCFD1-221ENST00000556534 TRAV8-7A0A075B6U6 113 aa2.29□□□□□ -2.04
SCFD1-221ENST00000556534 IGHV2OR16-5A0A0B4J2B6 119 aa2.29□□□□□ -2.04
SCFD1-221ENST00000556534 GOLGA8QA0A0J9YX86 632 aa2.29□□□□□ -2.04
SCFD1-221ENST00000556534 CDC40O60508 579 aaKnown RBP eCLIP2.29□□□□□ -2.04
SCFD1-221ENST00000556534 LIPCP11150 499 aa2.29□□□□□ -2.04
SCFD1-221ENST00000556534 IL12BP29460 328 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms