RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 DCTDP32321 178 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 ATP6V1E1P36543 226 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 PAX2Q02962 417 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 EGR3Q06889 387 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 ZNF829Q3KNS6 432 aaPredicted RBP9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 TP53I3Q53FA7 332 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 BCL2L15Q5TBC7 163 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 LIPNQ5VXI9 398 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 LPCAT4Q643R3 524 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 DUX4L9Q6RFH8 374 aaPredicted RBP9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 WDR82Q6UXN9 313 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 ZNF841Q6ZN19 808 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 KCTD8Q6ZWB6 473 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 FAM90A1Q86YD7 464 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 ENTHD1Q8IYW4 607 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 ELMOD2Q8IZ81 293 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 MUC20Q8N307 709 aaPredicted RBP9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 PLPP7Q8NBV4 271 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 RORBQ92753 470 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 RNFT2Q96EX2 444 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 NEIL1Q96FI4 390 aaPredicted RBP9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 RNF170Q96K19 258 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 MNTQ99583 582 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 C7orf69Q9H7B7 122 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 SMURF1Q9HCE7 757 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 AMBNQ9NP70 447 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 FAM118AQ9NWS6 357 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 DUX4Q9UBX2 424 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 PIGLQ9Y2B2 252 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 ZNF816-ZNF321PA0A0X1KG74 233 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 METTL15A6NJ78 407 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 J3QRE1 110 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 PHYHO14832 338 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 RHBDL1O75783 438 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 CLIC3O95833 236 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 KRT8P05787 483 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 ZNF12P17014 697 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 MAP2K3P46734 347 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 MTNR1AP48039 350 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 PITPNBP48739 271 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 GPM6AP51674 278 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 RCN1Q15293 331 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 OCLNQ16625 522 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 ESCO2Q56NI9 601 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 SLC25A30Q5SVS4 291 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 MOB3CQ70IA8 216 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 CATSPERDQ86XM0 798 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 RDH10Q8IZV5 341 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 PRSS35Q8N3Z0 413 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 SCCPDHQ8NBX0 429 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 OR5T2Q8NGG2 359 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 RHOXF1Q8NHV9 184 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 TRUB1Q8WWH5 349 aaKnown RBP9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 C22orf15Q8WYQ4 148 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 STMN2Q93045 179 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 RFKQ969G6 155 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 LGALS12Q96DT0 336 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 MICU1Q9BPX6 476 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 RTL8AQ9BWD3 113 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 SSBP3Q9BWW4 388 aaPredicted RBP9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 TLNRD1Q9H1K6 362 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 WDR13Q9H1Z4 485 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 ACOXLQ9NUZ1 547 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 MIOXQ9UGB7 285 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 GNG8Q9UK08 70 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 POLR3KQ9Y2Y1 108 aaPredicted RBP9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 MPC1Q9Y5U8 109 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 DNHD1Q96M86 4753 aa9.65□□□□□ -0.86
CCDC88C-208ENST00000554165 LOC100130705A0A1B0GUX0 176 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 OOEPA6NGQ2 149 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 ANXA2P2A6NMY6 339 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 RNF212BA8MTL3 300 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 A8MXK9 166 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 ZNF732B4DXR9 585 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 C22orf46C9J442 243 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 AKR7A2O43488 359 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 ADAM20O43506 726 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 FSTL3O95633 263 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 AMY2BP19961 511 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 PCMT1P22061 227 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 PEX2P28328 305 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 KIR3DL2P43630 455 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 OR12D2P58182 307 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 ISL1P61371 349 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 GNB2P62879 340 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 IL5RAQ01344 420 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 ZNF91Q05481 1191 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 SMN1Q16637 294 aaKnown RBP9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 KRTAP24-1Q3LI83 254 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 WDR38Q5JTN6 314 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 WDR25Q64LD2 544 aaPredicted RBP9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 DCDC5Q6ZRR9 648 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 ZDHHC23Q8IYP9 409 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 SEMA6DQ8NFY4 1073 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 OR8B3Q8NGG8 313 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 OR14K1Q8NGZ2 314 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 APH1BQ8WW43 257 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 DACT3Q96B18 629 aaPredicted RBP9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 OR8B2Q96RD0 313 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 CCL13Q99616 98 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms