RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 PATZ1Q9HBE1 687 aaKnown RBP12.09□□□□□ -0.47
CCDC88C-207ENST00000554051 MRPS18AQ9NVS2 196 aaKnown RBP12.09□□□□□ -0.47
CCDC88C-207ENST00000554051 RHBDD3Q9Y3P4 386 aa12.09□□□□□ -0.47
CCDC88C-207ENST00000554051 TRAV38-1A0A0B4J264 116 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 hCG_1807616A0A1W2PRN6 198 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 FAM157AC9JC47 383 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 F5H0A9 414 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 H0YHG0 523 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 H0YJX3 145 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 LGALS8O00214 317 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 DLGAP1O14490 977 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 WNT9BO14905 357 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 RPP14O95059 124 aaKnown RBP12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 APOL3O95236 402 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 CYB5R3P00387 301 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 IFNA2P01563 188 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 IGHA1P01876 353 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 FAM157CP0CG43 387 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 RPS2P15880 293 aaKnown RBP12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 CFHR2P36980 270 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 CAPGP40121 348 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 CCR9P51686 369 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 GNG3P63215 75 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 ZNF154Q13106 437 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 CEACAM21Q3KPI0 293 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 FDX2Q6P4F2 183 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 CATSPERDQ86XM0 798 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 C8orf59Q8N0T1 100 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 OR1M1Q8NGA1 313 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 OR8B3Q8NGG8 313 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 OR10Z1Q8NGY1 313 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 UBE2FQ969M7 185 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 C12orf43Q96C57 262 aaKnown RBP12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 FAM71F1Q96KD3 344 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 OR8B2Q96RD0 313 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 SOX7Q9BT81 388 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 UFSP2Q9NUQ7 469 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 ACOXLQ9NUZ1 547 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 C1orf123Q9NWV4 160 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 DCAF16Q9NXF7 216 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 OR5V1Q9UGF6 321 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 SLC22A13Q9Y226 551 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 PIGLQ9Y2B2 252 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 POLR3KQ9Y2Y1 108 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 V9GYS6 101 aa12.08□□□□□ -0.48
CCDC88C-207ENST00000554051 FN1P02751 2386 aaKnown RBP12.07□□□□□ -0.48
CCDC88C-207ENST00000554051 ABCA2Q9BZC7 2435 aa12.07□□□□□ -0.48
CCDC88C-207ENST00000554051 ZNF850A8MQ14 1090 aa12.07□□□□□ -0.48
CCDC88C-207ENST00000554051 CEACAM18A8MTB9 384 aa12.07□□□□□ -0.48
CCDC88C-207ENST00000554051 ANKRD65E5RJM6 399 aa12.07□□□□□ -0.48
CCDC88C-207ENST00000554051 SYT7O43581 403 aa12.07□□□□□ -0.48
CCDC88C-207ENST00000554051 GATBO75879 557 aaKnown RBP12.07□□□□□ -0.48
CCDC88C-207ENST00000554051 GRPP07492 148 aa12.07□□□□□ -0.48
CCDC88C-207ENST00000554051 DCKP27707 260 aa12.07□□□□□ -0.48
CCDC88C-207ENST00000554051 NPY4RP50391 375 aa12.07□□□□□ -0.48
CCDC88C-207ENST00000554051 GALEQ14376 348 aa12.07□□□□□ -0.48
CCDC88C-207ENST00000554051 MPPED2Q15777 294 aa12.07□□□□□ -0.48
CCDC88C-207ENST00000554051 CR1LQ2VPA4 569 aa12.07□□□□□ -0.48
CCDC88C-207ENST00000554051 C11orf91Q3C1V1 193 aa12.07□□□□□ -0.48
CCDC88C-207ENST00000554051 CLVS2Q5SYC1 327 aa12.07□□□□□ -0.48
CCDC88C-207ENST00000554051 TMEM244Q5VVB8 128 aa12.07□□□□□ -0.48
CCDC88C-207ENST00000554051 OR5A2Q8NGI9 324 aa12.07□□□□□ -0.48
CCDC88C-207ENST00000554051 APH1BQ8WW43 257 aa12.07□□□□□ -0.48
CCDC88C-207ENST00000554051 PIGCQ92535 297 aa12.07□□□□□ -0.48
CCDC88C-207ENST00000554051 RORBQ92753 470 aa12.07□□□□□ -0.48
CCDC88C-207ENST00000554051 DVL3Q92997 716 aaPredicted RBP12.07□□□□□ -0.48
CCDC88C-207ENST00000554051 NEIL1Q96FI4 390 aaPredicted RBP12.07□□□□□ -0.48
CCDC88C-207ENST00000554051 ALG8Q9BVK2 526 aa12.07□□□□□ -0.48
CCDC88C-207ENST00000554051 HIF1ANQ9NWT6 349 aa12.07□□□□□ -0.48
CCDC88C-207ENST00000554051 OOEPA6NGQ2 149 aa12.06□□□□□ -0.48
CCDC88C-207ENST00000554051 ISG15P05161 165 aa12.06□□□□□ -0.48
CCDC88C-207ENST00000554051 HTR1AP08908 422 aa12.06□□□□□ -0.48
CCDC88C-207ENST00000554051 CCDC159P0C7I6 412 aa12.06□□□□□ -0.48
CCDC88C-207ENST00000554051 MUC1P15941 1255 aaPredicted RBP12.06□□□□□ -0.48
CCDC88C-207ENST00000554051 SRD5A1P18405 259 aa12.06□□□□□ -0.48
CCDC88C-207ENST00000554051 MYL12AP19105 171 aa12.06□□□□□ -0.48
CCDC88C-207ENST00000554051 THBS2P35442 1172 aa12.06□□□□□ -0.48
CCDC88C-207ENST00000554051 ADARB1P78563 741 aaKnown RBP12.06□□□□□ -0.48
CCDC88C-207ENST00000554051 TP53I3Q53FA7 332 aa12.06□□□□□ -0.48
CCDC88C-207ENST00000554051 FAM76BQ5HYJ3 339 aa12.06□□□□□ -0.48
CCDC88C-207ENST00000554051 WDR38Q5JTN6 314 aa12.06□□□□□ -0.48
CCDC88C-207ENST00000554051 FAM120AOSQ5T036 256 aa12.06□□□□□ -0.48
CCDC88C-207ENST00000554051 PLCXD3Q63HM9 321 aa12.06□□□□□ -0.48
CCDC88C-207ENST00000554051 TMEM42Q69YG0 159 aa12.06□□□□□ -0.48
CCDC88C-207ENST00000554051 KCTD8Q6ZWB6 473 aa12.06□□□□□ -0.48
CCDC88C-207ENST00000554051 LRRC29Q8WV35 223 aa12.06□□□□□ -0.48
CCDC88C-207ENST00000554051 HPSE2Q8WWQ2 592 aa12.06□□□□□ -0.48
CCDC88C-207ENST00000554051 PP6455Q8WZ26 134 aa12.06□□□□□ -0.48
CCDC88C-207ENST00000554051 RNF170Q96K19 258 aa12.06□□□□□ -0.48
CCDC88C-207ENST00000554051 SSBP3Q9BWW4 388 aaPredicted RBP12.06□□□□□ -0.48
CCDC88C-207ENST00000554051 TMEM165Q9HC07 324 aa12.06□□□□□ -0.48
CCDC88C-207ENST00000554051 POLDIP2Q9Y2S7 368 aa12.06□□□□□ -0.48
CCDC88C-207ENST00000554051 NAV3Q8IVL0 2385 aa12.06□□□□□ -0.48
CCDC88C-207ENST00000554051 IGHV3-64DA0A0J9YX35 117 aa12.05□□□□□ -0.48
CCDC88C-207ENST00000554051 LOC107986453A0A1B0GWG9 222 aa12.05□□□□□ -0.48
CCDC88C-207ENST00000554051 P2RY10O00398 339 aa12.05□□□□□ -0.48
CCDC88C-207ENST00000554051 PLPP2O43688 288 aa12.05□□□□□ -0.48
CCDC88C-207ENST00000554051 WBP4O75554 376 aaKnown RBP12.05□□□□□ -0.48
CCDC88C-207ENST00000554051 SERPINA3P01011 423 aa12.05□□□□□ -0.48
CCDC88C-207ENST00000554051 NRASP01111 189 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms