RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 SLC25A14O95258 325 aaPredicted RBP4.04□□□□□ -1.76
SCFD1-208ENST00000553278 BCHEP06276 602 aa4.04□□□□□ -1.76
SCFD1-208ENST00000553278 KLK2P20151 261 aa4.04□□□□□ -1.76
SCFD1-208ENST00000553278 CXCR1P25024 350 aa4.04□□□□□ -1.76
SCFD1-208ENST00000553278 RPA3P35244 121 aaPredicted RBP4.04□□□□□ -1.76
SCFD1-208ENST00000553278 APLNRP35414 380 aa4.04□□□□□ -1.76
SCFD1-208ENST00000553278 TUFMP49411 452 aaKnown RBP4.04□□□□□ -1.76
SCFD1-208ENST00000553278 IFITM3Q01628 133 aa4.04□□□□□ -1.76
SCFD1-208ENST00000553278 INCA1Q0VD86 236 aa4.04□□□□□ -1.76
SCFD1-208ENST00000553278 IRF4Q15306 451 aa4.04□□□□□ -1.76
SCFD1-208ENST00000553278 RBMY1FQ15415 496 aaKnown RBP4.04□□□□□ -1.76
SCFD1-208ENST00000553278 TRAM1Q15629 374 aa4.04□□□□□ -1.76
SCFD1-208ENST00000553278 TRIP13Q15645 432 aaPredicted RBP4.04□□□□□ -1.76
SCFD1-208ENST00000553278 IDNKQ5T6J7 187 aa4.04□□□□□ -1.76
SCFD1-208ENST00000553278 FBXW9Q5XUX1 488 aa4.04□□□□□ -1.76
SCFD1-208ENST00000553278 GSG1LQ6UXU4 331 aa4.04□□□□□ -1.76
SCFD1-208ENST00000553278 Q6ZR54 194 aa4.04□□□□□ -1.76
SCFD1-208ENST00000553278 DNAAF3Q8N9W5 541 aa4.04□□□□□ -1.76
SCFD1-208ENST00000553278 UBA3Q8TBC4 463 aa4.04□□□□□ -1.76
SCFD1-208ENST00000553278 PIFOQ8TCI5 191 aa4.04□□□□□ -1.76
SCFD1-208ENST00000553278 RXFP4Q8TDU9 374 aa4.04□□□□□ -1.76
SCFD1-208ENST00000553278 PHF10Q8WUB8 498 aaKnown RBP4.04□□□□□ -1.76
SCFD1-208ENST00000553278 HSD17B10Q99714 261 aaKnown RBP4.04□□□□□ -1.76
SCFD1-208ENST00000553278 WDR54Q9H977 334 aa4.04□□□□□ -1.76
SCFD1-208ENST00000553278 ZDHHC4Q9NPG8 344 aa4.04□□□□□ -1.76
SCFD1-208ENST00000553278 IGHV3-66A0A0C4DH42 116 aa4.03□□□□□ -1.76
SCFD1-208ENST00000553278 IGKV1-8A0A0C4DH67 115 aa4.03□□□□□ -1.76
SCFD1-208ENST00000553278 PRAMEF26H0Y7S4 382 aa4.03□□□□□ -1.76
SCFD1-208ENST00000553278 J3QT63 122 aa4.03□□□□□ -1.76
SCFD1-208ENST00000553278 CDIPTO14735 213 aa4.03□□□□□ -1.76
SCFD1-208ENST00000553278 TAAR5O14804 337 aa4.03□□□□□ -1.76
SCFD1-208ENST00000553278 TOX3O15405 576 aaPredicted RBP4.03□□□□□ -1.76
SCFD1-208ENST00000553278 MYO1DO94832 1006 aa4.03□□□□□ -1.76
SCFD1-208ENST00000553278 IGLV1-47P01700 117 aa4.03□□□□□ -1.76
SCFD1-208ENST00000553278 DTYMKP23919 212 aa4.03□□□□□ -1.76
SCFD1-208ENST00000553278 ERFP50548 548 aa4.03□□□□□ -1.76
SCFD1-208ENST00000553278 ZNF136P52737 540 aa4.03□□□□□ -1.76
SCFD1-208ENST00000553278 EMP2P54851 167 aa4.03□□□□□ -1.76
SCFD1-208ENST00000553278 RPL23P62829 140 aaKnown RBP4.03□□□□□ -1.76
SCFD1-208ENST00000553278 CD164Q04900 197 aa4.03□□□□□ -1.76
SCFD1-208ENST00000553278 NAB1Q13506 487 aa4.03□□□□□ -1.76
SCFD1-208ENST00000553278 RAB31Q13636 194 aa4.03□□□□□ -1.76
SCFD1-208ENST00000553278 TMEM249Q2WGJ8 235 aa4.03□□□□□ -1.76
SCFD1-208ENST00000553278 HHATQ5VTY9 493 aa4.03□□□□□ -1.76
SCFD1-208ENST00000553278 LGI3Q8N145 548 aa4.03□□□□□ -1.76
SCFD1-208ENST00000553278 OR4K17Q8NGC6 315 aa4.03□□□□□ -1.76
SCFD1-208ENST00000553278 EXOSC8Q96B26 276 aaKnown RBP4.03□□□□□ -1.76
SCFD1-208ENST00000553278 ANKRD9Q96BM1 317 aaPredicted RBP4.03□□□□□ -1.76
SCFD1-208ENST00000553278 ING2Q9H160 280 aa4.03□□□□□ -1.76
SCFD1-208ENST00000553278 ABCB9Q9NP78 766 aa4.03□□□□□ -1.76
SCFD1-208ENST00000553278 HEBP1Q9NRV9 189 aa4.03□□□□□ -1.76
SCFD1-208ENST00000553278 PLSCR3Q9NRY6 295 aa4.03□□□□□ -1.76
SCFD1-208ENST00000553278 TMEM100Q9NV29 134 aa4.03□□□□□ -1.76
SCFD1-208ENST00000553278 ANXA10Q9UJ72 324 aa4.03□□□□□ -1.76
SCFD1-208ENST00000553278 MTCL1Q9Y4B5 1905 aaKnown RBP4.03□□□□□ -1.76
SCFD1-208ENST00000553278 CARMIL3Q8ND23 1372 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 RAD50Q92878 1312 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 TRAV8-6A0A0B4J262 113 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 A0A1B0GX12 115 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 DNASE2O00115 360 aaPredicted RBP4.02□□□□□ -1.77
SCFD1-208ENST00000553278 LIN7AO14910 233 aaPredicted RBP4.02□□□□□ -1.77
SCFD1-208ENST00000553278 SHOX2O60902 331 aaPredicted RBP4.02□□□□□ -1.77
SCFD1-208ENST00000553278 LY6G6DO95868 133 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 CGAP01215 116 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 TRBV12-3P01733 135 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 PPOXP50336 477 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 CRISP3P54108 245 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 RAB38P57729 211 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 PITPNAQ00169 270 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 CYP24A1Q07973 514 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 ZNHIT3Q15649 155 aaPredicted RBP4.02□□□□□ -1.77
SCFD1-208ENST00000553278 TTC32Q5I0X7 151 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 CEMP1Q6PRD7 247 aaPredicted RBP4.02□□□□□ -1.77
SCFD1-208ENST00000553278 FAM151BQ6UXP7 276 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 SPICQ8N5J4 248 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 RNF10Q8N5U6 811 aaKnown RBP4.02□□□□□ -1.77
SCFD1-208ENST00000553278 BLOC1S5Q8TDH9 187 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 RNASEH2CQ8TDP1 164 aaKnown RBP4.02□□□□□ -1.77
SCFD1-208ENST00000553278 TMEM158Q8WZ71 300 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 CDS1Q92903 461 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 PPWD1Q96BP3 646 aaKnown RBP4.02□□□□□ -1.77
SCFD1-208ENST00000553278 C8orf76Q96K31 380 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 FAM210BQ96KR6 192 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 ZNF488Q96MN9 340 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 OR2M4Q96R27 311 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 TMEM243Q9BU79 118 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 TMED9Q9BVK6 235 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 SFXN3Q9BWM7 321 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 KRTAP1-5Q9BYS1 174 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 SLC25A39Q9BZJ4 359 aaPredicted RBP4.02□□□□□ -1.77
SCFD1-208ENST00000553278 ASCL3Q9NQ33 180 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 C12orf4Q9NQ89 552 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 IMP3Q9NV31 184 aaKnown RBP4.02□□□□□ -1.77
SCFD1-208ENST00000553278 DDIT4Q9NX09 232 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 SIGLEC7Q9Y286 467 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 PPIL1Q9Y3C6 166 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 ORC6Q9Y5N6 252 aa4.02□□□□□ -1.77
SCFD1-208ENST00000553278 MN1Q10571 1320 aaPredicted RBP4.01□□□□□ -1.77
SCFD1-208ENST00000553278 PIKFYVEQ9Y2I7 2098 aa4.01□□□□□ -1.77
SCFD1-208ENST00000553278 TET2Q6N021 2002 aaPredicted RBP4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms