RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 RAB33BQ9H082 229 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 SERINC1Q9NRX5 453 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 ADAM29Q9UKF5 820 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 MRPS28Q9Y2Q9 187 aaKnown RBP4.89□□□□□ -1.63
LIMA1-203ENST00000547825 MPDZO75970 2070 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 DOPEY2Q9Y3R5 2298 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 CXorf51AA0A1B0GTR3 108 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 C17orf113A0A1B0GUU1 675 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 H3BP45 60 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 OR7C1O76099 320 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-203ENST00000547825 IL5P05113 134 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 MDKP21741 143 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-203ENST00000547825 RPL12P30050 165 aaKnown RBP4.89□□□□□ -1.63
LIMA1-203ENST00000547825 CX3CR1P49238 355 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 HOXA1P49639 335 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-203ENST00000547825 HHEXQ03014 270 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 PJVKQ0ZLH3 352 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 ADIRFQ15847 76 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 MIDNQ504T8 468 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 TMEM255AQ5JRV8 349 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 EOGTQ5NDL2 527 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 METRNLQ641Q3 311 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 LCN15Q6UWW0 184 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 ADGRE4PQ86SQ3 457 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 LRRC18Q8N456 261 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 PLPP5Q8NEB5 264 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 OR2G3Q8NGZ4 309 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 OR6S1Q8NH40 331 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 LMX1AQ8TE12 382 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 INTS12Q96CB8 462 aaKnown RBP4.89□□□□□ -1.63
LIMA1-203ENST00000547825 WBP1Q96G27 269 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 WDR92Q96MX6 357 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 APOOQ9BUR5 198 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 B9D1Q9UPM9 204 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 ICKQ9UPZ9 632 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 KPTNQ9Y664 436 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 A0A1W2PPE2 198 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 ANKRD20A5PA0PJZ0 165 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 CPED1A4D0V7 1026 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 MFSD2BA6NFX1 497 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 TUBAL3A6NHL2 446 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 G3V3Q6 166 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 IGHA1P01876 353 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 LCATP04180 440 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 ABCD3P28288 659 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 TSFMP43897 325 aaKnown RBP4.88□□□□□ -1.63
LIMA1-203ENST00000547825 ZNF84P51523 738 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 RAG2P55895 527 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 ZP1P60852 638 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 DUSP2Q05923 314 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 MESP2Q0VG99 397 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 SKP2Q13309 424 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 RAB32Q13637 225 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 RUNX2Q13950 521 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 FAM69BQ5VUD6 431 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 DMKNQ6E0U4 476 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-203ENST00000547825 WBP2NLQ6ICG8 309 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 RNF165Q6ZSG1 346 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 C1orf122Q6ZSJ8 110 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 ADIPOR2Q86V24 386 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 SYS1Q8N2H4 156 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 MRPS24Q96EL2 167 aaKnown RBP4.88□□□□□ -1.63
LIMA1-203ENST00000547825 NMNAT2Q9BZQ4 307 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 OR51B6Q9H340 312 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 ZNF160Q9HCG1 818 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 PLEK2Q9NYT0 353 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 CTSFQ9UBX1 484 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 TBC1D29Q9UFV1 150 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 OR52A1Q9UKL2 312 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 DAPP1Q9UN19 280 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 THADAQ6YHU6 1953 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 GIMAP1-GIMAP5A0A087WTJ2 511 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 PRSS29PA6NIE9 313 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 C4orf47A7E2U8 309 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 PHYHO14832 338 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 PHF1O43189 567 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-203ENST00000547825 ZNF264O43296 627 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 WIPF1O43516 503 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 CTAG2O75638 210 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 TRAPPC6AO75865 159 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 TNFP01375 233 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 HLA-DQB1P01920 261 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 FCGR2AP12318 317 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 RFC3P40938 356 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 PPIAP62937 165 aaKnown RBP4.88□□□□□ -1.63
LIMA1-203ENST00000547825 BTG2P78543 158 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 RPL18Q07020 188 aaKnown RBP4.88□□□□□ -1.63
LIMA1-203ENST00000547825 RIN1Q13671 783 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 RNF151Q2KHN1 245 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 C2orf68Q2NKX9 166 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 NHLRC3Q5JS37 347 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 RPUSD3Q6P087 351 aaKnown RBP4.88□□□□□ -1.63
LIMA1-203ENST00000547825 LYG2Q86SG7 212 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 LDLRAD3Q86YD5 345 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 NAXDQ8IW45 347 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 ZNF440Q8IYI8 595 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 SPICQ8N5J4 248 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 ZNF709Q8N972 641 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 ZNF485Q8NCK3 441 aa4.88□□□□□ -1.63
LIMA1-203ENST00000547825 HGDQ93099 445 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms