RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 TGM4P49221 684 aa10.46□□□□□ -0.73
USP28-212ENST00000544750 UBE2E1P51965 193 aa10.46□□□□□ -0.73
USP28-212ENST00000544750 PCK2Q16822 640 aa10.46□□□□□ -0.73
USP28-212ENST00000544750 SNAI3Q3KNW1 292 aa10.46□□□□□ -0.73
USP28-212ENST00000544750 WDR38Q5JTN6 314 aa10.46□□□□□ -0.73
USP28-212ENST00000544750 C11orf87Q6NUJ2 197 aa10.46□□□□□ -0.73
USP28-212ENST00000544750 MRPL21Q7Z2W9 205 aaKnown RBP10.46□□□□□ -0.73
USP28-212ENST00000544750 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.46□□□□□ -0.73
USP28-212ENST00000544750 LNX2Q8N448 690 aa10.46□□□□□ -0.73
USP28-212ENST00000544750 OR52L1Q8NGH7 329 aa10.46□□□□□ -0.73
USP28-212ENST00000544750 WIPF2Q8TF74 440 aaPredicted RBP10.46□□□□□ -0.73
USP28-212ENST00000544750 C17orf50Q8WW18 174 aa10.46□□□□□ -0.73
USP28-212ENST00000544750 ZNRF4Q8WWF5 429 aa10.46□□□□□ -0.73
USP28-212ENST00000544750 SGCDQ92629 289 aa10.46□□□□□ -0.73
USP28-212ENST00000544750 CCL13Q99616 98 aa10.46□□□□□ -0.73
USP28-212ENST00000544750 DCTN5Q9BTE1 182 aa10.46□□□□□ -0.73
USP28-212ENST00000544750 TSSK6Q9BXA6 273 aa10.46□□□□□ -0.73
USP28-212ENST00000544750 RANBP3Q9H6Z4 567 aaPredicted RBP10.46□□□□□ -0.73
USP28-212ENST00000544750 TBC1D23Q9NUY8 699 aa10.46□□□□□ -0.73
USP28-212ENST00000544750 MRPL15Q9P015 296 aaKnown RBP10.46□□□□□ -0.73
USP28-212ENST00000544750 DNAJB9Q9UBS3 223 aa10.46□□□□□ -0.73
USP28-212ENST00000544750 CYB5R1Q9UHQ9 305 aa10.46□□□□□ -0.73
USP28-212ENST00000544750 MEIOCA2RUB1 952 aa10.45□□□□□ -0.74
USP28-212ENST00000544750 H3BUX3 64 aa10.45□□□□□ -0.74
USP28-212ENST00000544750 TIPRLO75663 272 aa10.45□□□□□ -0.74
USP28-212ENST00000544750 RENP00797 406 aa10.45□□□□□ -0.74
USP28-212ENST00000544750 GRPP07492 148 aa10.45□□□□□ -0.74
USP28-212ENST00000544750 PSKH1P11801 424 aa10.45□□□□□ -0.74
USP28-212ENST00000544750 NOS3P29474 1203 aa10.45□□□□□ -0.74
USP28-212ENST00000544750 GGT2P36268 569 aa10.45□□□□□ -0.74
USP28-212ENST00000544750 ACSM1Q08AH1 577 aa10.45□□□□□ -0.74
USP28-212ENST00000544750 FOXB2Q5VYV0 432 aa10.45□□□□□ -0.74
USP28-212ENST00000544750 HCP5Q6MZN7 132 aa10.45□□□□□ -0.74
USP28-212ENST00000544750 WDR86Q86TI4 376 aa10.45□□□□□ -0.74
USP28-212ENST00000544750 CMTM4Q8IZR5 234 aa10.45□□□□□ -0.74
USP28-212ENST00000544750 LYG1Q8N1E2 194 aa10.45□□□□□ -0.74
USP28-212ENST00000544750 FAM216BQ8N7L0 139 aa10.45□□□□□ -0.74
USP28-212ENST00000544750 CYB561A3Q8NBI2 242 aa10.45□□□□□ -0.74
USP28-212ENST00000544750 SLC37A3Q8NCC5 494 aa10.45□□□□□ -0.74
USP28-212ENST00000544750 OR2AE1Q8NHA4 323 aa10.45□□□□□ -0.74
USP28-212ENST00000544750 MAP6Q96JE9 813 aa10.45□□□□□ -0.74
USP28-212ENST00000544750 PITX2Q99697 317 aa10.45□□□□□ -0.74
USP28-212ENST00000544750 SSX3Q99909 188 aa10.45□□□□□ -0.74
USP28-212ENST00000544750 NMNAT2Q9BZQ4 307 aa10.45□□□□□ -0.74
USP28-212ENST00000544750 MMP28Q9H239 520 aa10.45□□□□□ -0.74
USP28-212ENST00000544750 RNPEPL1Q9HAU8 725 aa10.45□□□□□ -0.74
USP28-212ENST00000544750 SRA1Q9HD15 236 aaKnown RBP10.45□□□□□ -0.74
USP28-212ENST00000544750 DNAJB11Q9UBS4 358 aa10.45□□□□□ -0.74
USP28-212ENST00000544750 hCG_1807616A0A1W2PRN6 198 aa10.44□□□□□ -0.74
USP28-212ENST00000544750 A6NLC8 198 aa10.44□□□□□ -0.74
USP28-212ENST00000544750 M0R135 149 aa10.44□□□□□ -0.74
USP28-212ENST00000544750 GNGT2O14610 69 aa10.44□□□□□ -0.74
USP28-212ENST00000544750 PAHP00439 452 aa10.44□□□□□ -0.74
USP28-212ENST00000544750 PRKACGP22612 351 aa10.44□□□□□ -0.74
USP28-212ENST00000544750 PYCR1P32322 319 aa10.44□□□□□ -0.74
USP28-212ENST00000544750 CENPAP49450 140 aa10.44□□□□□ -0.74
USP28-212ENST00000544750 TPTEP56180 551 aa10.44□□□□□ -0.74
USP28-212ENST00000544750 CRMP1Q14194 572 aa10.44□□□□□ -0.74
USP28-212ENST00000544750 MICBQ29980 383 aa10.44□□□□□ -0.74
USP28-212ENST00000544750 SLC36A3Q495N2 470 aa10.44□□□□□ -0.74
USP28-212ENST00000544750 ATPAF1Q5TC12 328 aaPredicted RBP10.44□□□□□ -0.74
USP28-212ENST00000544750 DNM1P34Q6PK57 102 aa10.44□□□□□ -0.74
USP28-212ENST00000544750 LYPD4Q6UWN0 246 aa10.44□□□□□ -0.74
USP28-212ENST00000544750 SLC36A1Q7Z2H8 476 aa10.44□□□□□ -0.74
USP28-212ENST00000544750 IQCF1Q8N6M8 205 aa10.44□□□□□ -0.74
USP28-212ENST00000544750 OR4C13Q8NGP0 309 aa10.44□□□□□ -0.74
USP28-212ENST00000544750 OR2T6Q8NHC8 308 aa10.44□□□□□ -0.74
USP28-212ENST00000544750 SEH1LQ96EE3 360 aa10.44□□□□□ -0.74
USP28-212ENST00000544750 DUS3LQ96G46 650 aaKnown RBP10.44□□□□□ -0.74
USP28-212ENST00000544750 ZNF799Q96GE5 643 aa10.44□□□□□ -0.74
USP28-212ENST00000544750 MEGF9Q9H1U4 602 aa10.44□□□□□ -0.74
USP28-212ENST00000544750 YY1AP1Q9H869 796 aa10.44□□□□□ -0.74
USP28-212ENST00000544750 MRPL22Q9NWU5 206 aaKnown RBP10.44□□□□□ -0.74
USP28-212ENST00000544750 GGT3PA6NGU5 568 aa10.43□□□□□ -0.74
USP28-212ENST00000544750 K7EIL1 84 aa10.43□□□□□ -0.74
USP28-212ENST00000544750 CHST1O43916 411 aa10.43□□□□□ -0.74
USP28-212ENST00000544750 CLUP10909 449 aa10.43□□□□□ -0.74
USP28-212ENST00000544750 SELLP14151 372 aa10.43□□□□□ -0.74
USP28-212ENST00000544750 EMX1Q04741 257 aaPredicted RBP10.43□□□□□ -0.74
USP28-212ENST00000544750 LY6EQ16553 131 aa10.43□□□□□ -0.74
USP28-212ENST00000544750 AANATQ16613 207 aa10.43□□□□□ -0.74
USP28-212ENST00000544750 NSUN5P1Q3KNT7 163 aa10.43□□□□□ -0.74
USP28-212ENST00000544750 GLYATL3Q5SZD4 288 aa10.43□□□□□ -0.74
USP28-212ENST00000544750 C1orf146Q5VVC0 180 aa10.43□□□□□ -0.74
USP28-212ENST00000544750 STUMQ69YW2 141 aa10.43□□□□□ -0.74
USP28-212ENST00000544750 WDR82Q6UXN9 313 aa10.43□□□□□ -0.74
USP28-212ENST00000544750 WFDC9Q8NEX5 89 aa10.43□□□□□ -0.74
USP28-212ENST00000544750 OR2T33Q8NG76 320 aa10.43□□□□□ -0.74
USP28-212ENST00000544750 OR4S1Q8NGB4 309 aa10.43□□□□□ -0.74
USP28-212ENST00000544750 OR56B2PQ8NGI1 322 aa10.43□□□□□ -0.74
USP28-212ENST00000544750 OR9Q1Q8NGQ5 310 aa10.43□□□□□ -0.74
USP28-212ENST00000544750 LRRC29Q8WV35 223 aa10.43□□□□□ -0.74
USP28-212ENST00000544750 RORBQ92753 470 aa10.43□□□□□ -0.74
USP28-212ENST00000544750 C12orf43Q96C57 262 aaKnown RBP10.43□□□□□ -0.74
USP28-212ENST00000544750 SERTAD4Q9NUC0 356 aa10.43□□□□□ -0.74
USP28-212ENST00000544750 C14orf119Q9NWQ9 140 aa10.43□□□□□ -0.74
USP28-212ENST00000544750 BAIAP2Q9UQB8 552 aa10.43□□□□□ -0.74
USP28-212ENST00000544750 DSCAML1Q8TD84 2053 aa10.42□□□□□ -0.74
USP28-212ENST00000544750 M0R1W7 72 aa10.42□□□□□ -0.74
USP28-212ENST00000544750 NDUFB3O43676 98 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms