RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 PDZK1IP1Q13113 114 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 PLPPR5Q32ZL2 321 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 Q6ZSR3 168 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 SYT13Q7L8C5 426 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 RTN4RL2Q86UN3 420 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 COMMD2Q86X83 199 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 APCDD1LQ8NCL9 501 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 NFAM1Q8NET5 270 aaPredicted RBP12.1□□□□□ -0.47
VPS33A-208ENST00000543633 CSNK2A3Q8NEV1 391 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 LYPD6BQ8NI32 183 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 ROBO4Q8WZ75 1007 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 GPER1Q99527 375 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 LOC102725191A0A1B0GVB3 256 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 RNASEK-C17orf49H0YIS7 233 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 KCNAB3O43448 404 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 JTBO76095 146 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 IFNA2P01563 188 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 ATXN8OSP0DMR3 200 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 ZNF17P17021 662 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 FKBP2P26885 142 aaKnown RBP12.1□□□□□ -0.47
VPS33A-208ENST00000543633 RBMXP38159 391 aaKnown RBP12.1□□□□□ -0.47
VPS33A-208ENST00000543633 SNU13P55769 128 aaKnown RBP12.1□□□□□ -0.47
VPS33A-208ENST00000543633 MYBPHQ13203 477 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 PEA15Q15121 130 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 TSC22D1Q15714 1073 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 HIST3H3Q16695 136 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 DEFB133Q30KQ1 61 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 SLC16A14Q7RTX9 510 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 TMEM200AQ86VY9 491 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 C15orf54Q8N8G6 183 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 OR14K1Q8NGZ2 314 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 SLC25A43Q8WUT9 341 aaPredicted RBP12.1□□□□□ -0.47
VPS33A-208ENST00000543633 C10orf35Q96D05 121 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 C12orf57Q99622 126 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 ADAT1Q9BUB4 502 aaKnown RBP12.1□□□□□ -0.47
VPS33A-208ENST00000543633 EMC6Q9BV81 110 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 CNTNAP3Q9BZ76 1288 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 EGLN1Q9GZT9 426 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 SMCO4Q9NRQ5 59 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 SLC22A11Q9NSA0 550 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 EHFQ9NZC4 300 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 PPP4R1LQ9P1A2 415 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 TUBD1Q9UJT1 453 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 KPTNQ9Y664 436 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 FCGR3AP08637 254 aa12.09□□□□□ -0.47
VPS33A-208ENST00000543633 HKR1P10072 659 aa12.09□□□□□ -0.47
VPS33A-208ENST00000543633 AKR1D1P51857 326 aa12.09□□□□□ -0.47
VPS33A-208ENST00000543633 DVL1P1P54792 670 aaPredicted RBP12.09□□□□□ -0.47
VPS33A-208ENST00000543633 SMCO1Q147U7 214 aa12.09□□□□□ -0.47
VPS33A-208ENST00000543633 PRSS58Q8IYP2 241 aa12.09□□□□□ -0.47
VPS33A-208ENST00000543633 OR51F2Q8NH61 342 aa12.09□□□□□ -0.47
VPS33A-208ENST00000543633 PP6455Q8WZ26 134 aa12.09□□□□□ -0.47
VPS33A-208ENST00000543633 ZNF775Q96BV0 537 aaPredicted RBP12.09□□□□□ -0.47
VPS33A-208ENST00000543633 ZNF501Q96CX3 271 aaPredicted RBP12.09□□□□□ -0.47
VPS33A-208ENST00000543633 OXGR1Q96P68 337 aa12.09□□□□□ -0.47
VPS33A-208ENST00000543633 BANF2Q9H503 90 aa12.09□□□□□ -0.47
VPS33A-208ENST00000543633 PLEKHA2Q9HB19 425 aa12.09□□□□□ -0.47
VPS33A-208ENST00000543633 VDAC3Q9Y277 283 aa12.09□□□□□ -0.47
VPS33A-208ENST00000543633 B3GALT1Q9Y5Z6 326 aa12.09□□□□□ -0.47
VPS33A-208ENST00000543633 RP1P56715 2156 aa12.09□□□□□ -0.47
VPS33A-208ENST00000543633 FER1L5A0AVI2 2057 aa12.09□□□□□ -0.47
VPS33A-208ENST00000543633 A0A0U1RQV5 110 aa12.08□□□□□ -0.48
VPS33A-208ENST00000543633 METTL12A8MUP2 240 aa12.08□□□□□ -0.48
VPS33A-208ENST00000543633 LRP3O75074 770 aa12.08□□□□□ -0.48
VPS33A-208ENST00000543633 MED6O75586 246 aa12.08□□□□□ -0.48
VPS33A-208ENST00000543633 CTSDP07339 412 aaPredicted RBP12.08□□□□□ -0.48
VPS33A-208ENST00000543633 SFTA3P0C7M3 94 aa12.08□□□□□ -0.48
VPS33A-208ENST00000543633 FOLR1P15328 257 aa12.08□□□□□ -0.48
VPS33A-208ENST00000543633 ZNF708P17019 499 aa12.08□□□□□ -0.48
VPS33A-208ENST00000543633 CPT2P23786 658 aa12.08□□□□□ -0.48
VPS33A-208ENST00000543633 RPL35P42766 123 aaKnown RBP12.08□□□□□ -0.48
VPS33A-208ENST00000543633 LPAR6P43657 344 aa12.08□□□□□ -0.48
VPS33A-208ENST00000543633 ZNF133P52736 654 aaPredicted RBP12.08□□□□□ -0.48
VPS33A-208ENST00000543633 LSM6P62312 80 aaKnown RBP12.08□□□□□ -0.48
VPS33A-208ENST00000543633 FAM3AP98173 230 aa12.08□□□□□ -0.48
VPS33A-208ENST00000543633 Q6ZS52 159 aa12.08□□□□□ -0.48
VPS33A-208ENST00000543633 ANKRD37Q7Z713 158 aa12.08□□□□□ -0.48
VPS33A-208ENST00000543633 OR51T1Q8NGJ9 327 aa12.08□□□□□ -0.48
VPS33A-208ENST00000543633 RXFP4Q8TDU9 374 aa12.08□□□□□ -0.48
VPS33A-208ENST00000543633 FAM71F1Q96KD3 344 aaPredicted RBP12.08□□□□□ -0.48
VPS33A-208ENST00000543633 SPACA5Q96QH8 159 aa12.08□□□□□ -0.48
VPS33A-208ENST00000543633 PECRQ9BY49 303 aa12.08□□□□□ -0.48
VPS33A-208ENST00000543633 HRH4Q9H3N8 390 aa12.08□□□□□ -0.48
VPS33A-208ENST00000543633 ESRP2Q9H6T0 727 aaKnown RBP12.08□□□□□ -0.48
VPS33A-208ENST00000543633 DECR2Q9NUI1 292 aa12.08□□□□□ -0.48
VPS33A-208ENST00000543633 IGKV1-9A0A0C4DH69 117 aa12.08□□□□□ -0.48
VPS33A-208ENST00000543633 MEX3AA1L020 520 aaKnown RBP12.08□□□□□ -0.48
VPS33A-208ENST00000543633 PMS2P1A4D2B8 440 aa12.08□□□□□ -0.48
VPS33A-208ENST00000543633 PCP4L1A6NKN8 68 aa12.08□□□□□ -0.48
VPS33A-208ENST00000543633 DEDDO75618 318 aa12.08□□□□□ -0.48
VPS33A-208ENST00000543633 CRYBA1P05813 215 aa12.08□□□□□ -0.48
VPS33A-208ENST00000543633 HPNP05981 417 aa12.08□□□□□ -0.48
VPS33A-208ENST00000543633 PTGFRP43088 359 aa12.08□□□□□ -0.48
VPS33A-208ENST00000543633 MEOX2P50222 304 aa12.08□□□□□ -0.48
VPS33A-208ENST00000543633 RAB5BP61020 215 aa12.08□□□□□ -0.48
VPS33A-208ENST00000543633 CHRFAM7AQ494W8 412 aa12.08□□□□□ -0.48
VPS33A-208ENST00000543633 C1orf189Q5VU69 101 aa12.08□□□□□ -0.48
VPS33A-208ENST00000543633 RPL7L1Q6DKI1 246 aaKnown RBP12.08□□□□□ -0.48
VPS33A-208ENST00000543633 RNF144BQ7Z419 303 aa12.08□□□□□ -0.48
VPS33A-208ENST00000543633 ZNF283Q8N7M2 679 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms