RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 OR51E1Q8TCB6 317 aa11.82□□□□□ -0.52
USP28-209ENST00000540925 RNF166Q96A37 237 aaPredicted RBP11.82□□□□□ -0.52
USP28-209ENST00000540925 SLC29A1Q99808 456 aa11.82□□□□□ -0.52
USP28-209ENST00000540925 MOB1AQ9H8S9 216 aa11.82□□□□□ -0.52
USP28-209ENST00000540925 TRIM36Q9NQ86 728 aa11.82□□□□□ -0.52
USP28-209ENST00000540925 GPR84Q9NQS5 396 aa11.82□□□□□ -0.52
USP28-209ENST00000540925 IKZF2Q9UKS7 526 aa11.82□□□□□ -0.52
USP28-209ENST00000540925 DOCK11Q5JSL3 2073 aa11.82□□□□□ -0.52
USP28-209ENST00000540925 A0A0A6YYJ9 748 aa11.81□□□□□ -0.52
USP28-209ENST00000540925 TRAV38-1A0A0B4J264 116 aa11.81□□□□□ -0.52
USP28-209ENST00000540925 IGHV2-70DA0A0C4DH43 119 aa11.81□□□□□ -0.52
USP28-209ENST00000540925 ZNF816-ZNF321PA0A0X1KG74 233 aa11.81□□□□□ -0.52
USP28-209ENST00000540925 A0A1B0GTI1 187 aa11.81□□□□□ -0.52
USP28-209ENST00000540925 A0A1W2PQL4 384 aaPredicted RBP11.81□□□□□ -0.52
USP28-209ENST00000540925 A6NLC8 198 aa11.81□□□□□ -0.52
USP28-209ENST00000540925 TMEM210A6NLX4 147 aa11.81□□□□□ -0.52
USP28-209ENST00000540925 ZNF850A8MQ14 1090 aa11.81□□□□□ -0.52
USP28-209ENST00000540925 SRRM5B3KS81 715 aa11.81□□□□□ -0.52
USP28-209ENST00000540925 C22orf46C9J442 243 aa11.81□□□□□ -0.52
USP28-209ENST00000540925 ZNF670-ZNF695F2Z2N8 137 aa11.81□□□□□ -0.52
USP28-209ENST00000540925 C3orf80F5H4A9 247 aa11.81□□□□□ -0.52
USP28-209ENST00000540925 TCF21O43680 179 aa11.81□□□□□ -0.52
USP28-209ENST00000540925 EPHA1P21709 976 aa11.81□□□□□ -0.52
USP28-209ENST00000540925 CCL1P22362 96 aa11.81□□□□□ -0.52
USP28-209ENST00000540925 GNALP38405 381 aa11.81□□□□□ -0.52
USP28-209ENST00000540925 MAP2K3P46734 347 aa11.81□□□□□ -0.52
USP28-209ENST00000540925 KCNJ8Q15842 424 aa11.81□□□□□ -0.52
USP28-209ENST00000540925 OCLNQ16625 522 aa11.81□□□□□ -0.52
USP28-209ENST00000540925 TMEM42Q69YG0 159 aa11.81□□□□□ -0.52
USP28-209ENST00000540925 SFRP4Q6FHJ7 346 aaPredicted RBP11.81□□□□□ -0.52
USP28-209ENST00000540925 USP43Q70EL4 1123 aa11.81□□□□□ -0.52
USP28-209ENST00000540925 NLRC3Q7RTR2 1065 aa11.81□□□□□ -0.52
USP28-209ENST00000540925 OR8B3Q8NGG8 313 aa11.81□□□□□ -0.52
USP28-209ENST00000540925 NANPQ8TBE9 248 aa11.81□□□□□ -0.52
USP28-209ENST00000540925 RAB40AQ8WXH6 277 aa11.81□□□□□ -0.52
USP28-209ENST00000540925 RAB3IPQ96QF0 476 aaPredicted RBP11.81□□□□□ -0.52
USP28-209ENST00000540925 OR8B2Q96RD0 313 aa11.81□□□□□ -0.52
USP28-209ENST00000540925 MICU1Q9BPX6 476 aa11.81□□□□□ -0.52
USP28-209ENST00000540925 RTL8AQ9BWD3 113 aa11.81□□□□□ -0.52
USP28-209ENST00000540925 KAAG1Q9UBP8 84 aa11.81□□□□□ -0.52
USP28-209ENST00000540925 OR5V1Q9UGF6 321 aa11.81□□□□□ -0.52
USP28-209ENST00000540925 AUP1Q9Y679 476 aa11.81□□□□□ -0.52
USP28-209ENST00000540925 KIR2DS1A0A191URI9 304 aa11.8□□□□□ -0.52
USP28-209ENST00000540925 ANXA2P2A6NMY6 339 aa11.8□□□□□ -0.52
USP28-209ENST00000540925 CDIPTO14735 213 aa11.8□□□□□ -0.52
USP28-209ENST00000540925 NDUFA2O43678 99 aa11.8□□□□□ -0.52
USP28-209ENST00000540925 ENTPD6O75354 484 aa11.8□□□□□ -0.52
USP28-209ENST00000540925 SULT1C4O75897 302 aa11.8□□□□□ -0.52
USP28-209ENST00000540925 DHRS3O75911 302 aa11.8□□□□□ -0.52
USP28-209ENST00000540925 APOL3O95236 402 aa11.8□□□□□ -0.52
USP28-209ENST00000540925 NPY4RP50391 375 aa11.8□□□□□ -0.52
USP28-209ENST00000540925 GNB2P62879 340 aa11.8□□□□□ -0.52
USP28-209ENST00000540925 RIPPLY1Q0D2K3 151 aa11.8□□□□□ -0.52
USP28-209ENST00000540925 SCGB2A2Q13296 93 aa11.8□□□□□ -0.52
USP28-209ENST00000540925 CEACAM21Q3KPI0 293 aa11.8□□□□□ -0.52
USP28-209ENST00000540925 PLEKHG7Q6ZR37 379 aa11.8□□□□□ -0.52
USP28-209ENST00000540925 CATSPERDQ86XM0 798 aa11.8□□□□□ -0.52
USP28-209ENST00000540925 ZDHHC23Q8IYP9 409 aa11.8□□□□□ -0.52
USP28-209ENST00000540925 OR10Z1Q8NGY1 313 aa11.8□□□□□ -0.52
USP28-209ENST00000540925 LRRC29Q8WV35 223 aa11.8□□□□□ -0.52
USP28-209ENST00000540925 PIGCQ92535 297 aa11.8□□□□□ -0.52
USP28-209ENST00000540925 RFKQ969G6 155 aa11.8□□□□□ -0.52
USP28-209ENST00000540925 C9orf16Q9BUW7 83 aa11.8□□□□□ -0.52
USP28-209ENST00000540925 SMURF1Q9HCE7 757 aa11.8□□□□□ -0.52
USP28-209ENST00000540925 CLN8Q9UBY8 286 aa11.8□□□□□ -0.52
USP28-209ENST00000540925 OR52A1Q9UKL2 312 aa11.8□□□□□ -0.52
USP28-209ENST00000540925 SNX5Q9Y5X3 404 aa11.8□□□□□ -0.52
USP28-209ENST00000540925 V9GYS6 101 aa11.8□□□□□ -0.52
USP28-209ENST00000540925 hCG_1807616A0A1W2PRN6 198 aa11.79□□□□□ -0.52
USP28-209ENST00000540925 DHRS7CA6NNS2 312 aa11.79□□□□□ -0.52
USP28-209ENST00000540925 LOC110117498-PIK3R3F6TDL0 507 aa11.79□□□□□ -0.52
USP28-209ENST00000540925 DLGAP1O14490 977 aa11.79□□□□□ -0.52
USP28-209ENST00000540925 VENTXO95231 258 aa11.79□□□□□ -0.52
USP28-209ENST00000540925 MUC1P15941 1255 aaPredicted RBP11.79□□□□□ -0.52
USP28-209ENST00000540925 AMY2BP19961 511 aa11.79□□□□□ -0.52
USP28-209ENST00000540925 HILS1P60008 231 aa11.79□□□□□ -0.52
USP28-209ENST00000540925 ZNF85Q03923 595 aa11.79□□□□□ -0.52
USP28-209ENST00000540925 ZIK1Q3SY52 487 aaPredicted RBP11.79□□□□□ -0.52
USP28-209ENST00000540925 LIPNQ5VXI9 398 aa11.79□□□□□ -0.52
USP28-209ENST00000540925 MEDAGQ5VYS4 303 aa11.79□□□□□ -0.52
USP28-209ENST00000540925 BOLLQ8N9W6 283 aaKnown RBP11.79□□□□□ -0.52
USP28-209ENST00000540925 SCCPDHQ8NBX0 429 aa11.79□□□□□ -0.52
USP28-209ENST00000540925 OR14K1Q8NGZ2 314 aa11.79□□□□□ -0.52
USP28-209ENST00000540925 RORBQ92753 470 aa11.79□□□□□ -0.52
USP28-209ENST00000540925 RPL3LQ92901 407 aaKnown RBP11.79□□□□□ -0.52
USP28-209ENST00000540925 UPRTQ96BW1 309 aa11.79□□□□□ -0.52
USP28-209ENST00000540925 C12orf43Q96C57 262 aaKnown RBP11.79□□□□□ -0.52
USP28-209ENST00000540925 TBX5Q99593 518 aa11.79□□□□□ -0.52
USP28-209ENST00000540925 C19orf24Q9BVV8 132 aa11.79□□□□□ -0.52
USP28-209ENST00000540925 OR51I2Q9H344 312 aa11.79□□□□□ -0.52
USP28-209ENST00000540925 IMPAD1Q9NX62 359 aa11.79□□□□□ -0.52
USP28-209ENST00000540925 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.79□□□□□ -0.52
USP28-209ENST00000540925 ORC6Q9Y5N6 252 aa11.79□□□□□ -0.52
USP28-209ENST00000540925 METTL15A6NJ78 407 aa11.78□□□□□ -0.52
USP28-209ENST00000540925 ADAM20O43506 726 aa11.78□□□□□ -0.52
USP28-209ENST00000540925 GYPAP02724 150 aa11.78□□□□□ -0.52
USP28-209ENST00000540925 KRT8P05787 483 aa11.78□□□□□ -0.52
USP28-209ENST00000540925 FAHP16930 419 aa11.78□□□□□ -0.52
USP28-209ENST00000540925 MTNR1AP48039 350 aa11.78□□□□□ -0.52
USP28-209ENST00000540925 GNG3P63215 75 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms