RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 GLI4P10075 376 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 GABRG2P18507 467 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 TAS2R46P59540 309 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 ECH1Q13011 328 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 SULF2Q8IWU5 870 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 FAM24BQ8N5W8 94 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 TOMM40LQ969M1 308 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 CHST11Q9NPF2 352 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 GHRLQ9UBU3 117 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 MIOXQ9UGB7 285 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 SRPK3Q9UPE1 567 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 CHD9Q3L8U1 2897 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 A0A1W2PPE3 182 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 A0A1W2PQD3 144 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 IGHMP01871 453 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 MT-ND4LP03901 98 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 RD3LP0DJH9 198 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 CEBPGP53567 150 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 BTNL8Q6UX41 500 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 SGPP2Q8IWX5 399 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 EMG1Q92979 244 aaKnown RBP9.95□□□□□ -0.82
SYNE1-237ENST00000539504 CNTNAP3Q9BZ76 1288 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 SLCO1B1Q9Y6L6 691 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 CD5P06127 495 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 IGHV4-34P06331 123 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 ZNF708P17019 499 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 FBLP22087 321 aaKnown RBP9.95□□□□□ -0.82
SYNE1-237ENST00000539504 LAP3P28838 519 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 GLP1RP43220 463 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 LANCL3Q6ZV70 420 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 DMBX1Q8NFW5 382 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 OR8B12Q8NGG6 310 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 RAB33BQ9H082 229 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 PARP11Q9NR21 331 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 FAM212BQ9NTI7 297 aaPredicted RBP9.95□□□□□ -0.82
SYNE1-237ENST00000539504 CACFD1Q9UGQ2 172 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 FBXO7Q9Y3I1 522 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 PCNX3Q9H6A9 2034 aa9.94□□□□□ -0.82
SYNE1-237ENST00000539504 VSTM2BA6NLU5 285 aa9.94□□□□□ -0.82
SYNE1-237ENST00000539504 FTCDNL1E5RQL4 147 aa9.94□□□□□ -0.82
SYNE1-237ENST00000539504 RER1O15258 196 aa9.94□□□□□ -0.82
SYNE1-237ENST00000539504 GABRR1P24046 479 aa9.94□□□□□ -0.82
SYNE1-237ENST00000539504 OR5AS1Q8N127 324 aa9.94□□□□□ -0.82
SYNE1-237ENST00000539504 OR10S1Q8NGN2 331 aa9.94□□□□□ -0.82
SYNE1-237ENST00000539504 TCTEX1D2Q8WW35 142 aa9.94□□□□□ -0.82
SYNE1-237ENST00000539504 RLN3Q8WXF3 142 aa9.94□□□□□ -0.82
SYNE1-237ENST00000539504 PRRX2Q99811 253 aa9.94□□□□□ -0.82
SYNE1-237ENST00000539504 ZNF2Q9BSG1 426 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-237ENST00000539504 STMND1H3BQB6 276 aa9.94□□□□□ -0.82
SYNE1-237ENST00000539504 POLR2GP62487 172 aaKnown RBP eCLIP9.94□□□□□ -0.82
SYNE1-237ENST00000539504 FAM189A2Q15884 450 aa9.94□□□□□ -0.82
SYNE1-237ENST00000539504 GUK1Q16774 197 aa9.94□□□□□ -0.82
SYNE1-237ENST00000539504 DDIT4LQ96D03 193 aa9.94□□□□□ -0.82
SYNE1-237ENST00000539504 PGAM5Q96HS1 289 aa9.94□□□□□ -0.82
SYNE1-237ENST00000539504 DUSP15Q9H1R2 295 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-237ENST00000539504 MED12Q93074 2177 aa9.94□□□□□ -0.82
SYNE1-237ENST00000539504 TRBV23-1A0A0A0MS06 115 aa9.94□□□□□ -0.82
SYNE1-237ENST00000539504 C5orf52A6NGY3 159 aa9.94□□□□□ -0.82
SYNE1-237ENST00000539504 FIGNL2A6NMB9 653 aa9.94□□□□□ -0.82
SYNE1-237ENST00000539504 XRCC2O43543 280 aa9.94□□□□□ -0.82
SYNE1-237ENST00000539504 OR13C7P0DN81 318 aa9.94□□□□□ -0.82
SYNE1-237ENST00000539504 PTGER4P35408 488 aa9.94□□□□□ -0.82
SYNE1-237ENST00000539504 GABREP78334 506 aa9.94□□□□□ -0.82
SYNE1-237ENST00000539504 FOXF1Q12946 379 aa9.94□□□□□ -0.82
SYNE1-237ENST00000539504 CHAF1BQ13112 559 aa9.94□□□□□ -0.82
SYNE1-237ENST00000539504 COL13A1Q5TAT6 717 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-237ENST00000539504 AADACL3Q5VUY0 350 aa9.94□□□□□ -0.82
SYNE1-237ENST00000539504 OPN5Q6U736 354 aa9.94□□□□□ -0.82
SYNE1-237ENST00000539504 C5orf46Q6UWT4 87 aa9.94□□□□□ -0.82
SYNE1-237ENST00000539504 UEVLDQ8IX04 471 aa9.94□□□□□ -0.82
SYNE1-237ENST00000539504 HSD17B11Q8NBQ5 300 aa9.94□□□□□ -0.82
SYNE1-237ENST00000539504 KCNJ16Q9NPI9 418 aa9.94□□□□□ -0.82
SYNE1-237ENST00000539504 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.94□□□□□ -0.82
SYNE1-237ENST00000539504 TLCD2A6NGC4 264 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 UMAD1C9J7I0 102 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 ZNF205O95201 554 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 DIRAS3O95661 229 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 FHITP49789 147 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 ACY1Q03154 408 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 HMGN3Q15651 99 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 DEFB133Q30KQ1 61 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 SP6Q3SY56 376 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 NUP210LQ5VU65 1888 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 ZNF565Q8N9K5 539 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 OR1N1Q8NGS0 311 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 MFSD8Q8NHS3 518 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 MRPL24Q96A35 216 aaKnown RBP9.93□□□□□ -0.82
SYNE1-237ENST00000539504 LIN37Q96GY3 246 aaPredicted RBP9.93□□□□□ -0.82
SYNE1-237ENST00000539504 ZNF285Q96NJ3 590 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 SERINC1Q9NRX5 453 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 KLRF1Q9NZS2 232 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 DOCK8Q8NF50 2099 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 BORCS7-ASMTA0A0B4J1R7 106 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 C1QL1O75973 258 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 MFAP5Q13361 173 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 NAXEQ8NCW5 288 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 SEMA6DQ8NFY4 1073 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 OCSTAMPQ9BR26 566 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 TCEAL7Q9BRU2 100 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 OSGIN2Q9Y236 505 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms