RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 RAB1CQ92928 201 aa13.23□□□□□ -0.29
RPAIN-206ENST00000539417 JAM3Q9BX67 310 aa13.23□□□□□ -0.29
RPAIN-206ENST00000539417 LPAR2Q9HBW0 351 aa13.23□□□□□ -0.29
RPAIN-206ENST00000539417 PSORS1C1Q9UIG5 152 aa13.23□□□□□ -0.29
RPAIN-206ENST00000539417 MPC1Q9Y5U8 109 aa13.23□□□□□ -0.29
RPAIN-206ENST00000539417 MALRD1Q5VYJ5 2156 aa13.22□□□□□ -0.29
RPAIN-206ENST00000539417 LOC107986453A0A1B0GWG9 222 aa13.22□□□□□ -0.29
RPAIN-206ENST00000539417 OR4C45A6NMZ5 311 aa13.22□□□□□ -0.29
RPAIN-206ENST00000539417 LALBAP00709 142 aa13.22□□□□□ -0.29
RPAIN-206ENST00000539417 CD80P33681 288 aa13.22□□□□□ -0.29
RPAIN-206ENST00000539417 GNALP38405 381 aa13.22□□□□□ -0.29
RPAIN-206ENST00000539417 BTG1P62324 171 aa13.22□□□□□ -0.29
RPAIN-206ENST00000539417 ACTA2P62736 377 aa13.22□□□□□ -0.29
RPAIN-206ENST00000539417 ACTG2P63267 376 aa13.22□□□□□ -0.29
RPAIN-206ENST00000539417 ZNF181Q2M3W8 571 aa13.22□□□□□ -0.29
RPAIN-206ENST00000539417 MOB3CQ70IA8 216 aa13.22□□□□□ -0.29
RPAIN-206ENST00000539417 KCTD20Q7Z5Y7 419 aa13.22□□□□□ -0.29
RPAIN-206ENST00000539417 LRRC28Q86X40 367 aaPredicted RBP13.22□□□□□ -0.29
RPAIN-206ENST00000539417 KLBQ86Z14 1044 aa13.22□□□□□ -0.29
RPAIN-206ENST00000539417 ZDHHC23Q8IYP9 409 aa13.22□□□□□ -0.29
RPAIN-206ENST00000539417 SYS1Q8N2H4 156 aa13.22□□□□□ -0.29
RPAIN-206ENST00000539417 BOLLQ8N9W6 283 aaKnown RBP13.22□□□□□ -0.29
RPAIN-206ENST00000539417 OR51A4Q8NGJ6 313 aa13.22□□□□□ -0.29
RPAIN-206ENST00000539417 RPL3LQ92901 407 aaKnown RBP13.22□□□□□ -0.29
RPAIN-206ENST00000539417 TIMD4Q96H15 378 aa13.22□□□□□ -0.29
RPAIN-206ENST00000539417 C1orf159Q96HA4 380 aa13.22□□□□□ -0.29
RPAIN-206ENST00000539417 ZNF665Q9H7R5 613 aa13.22□□□□□ -0.29
RPAIN-206ENST00000539417 TMEM165Q9HC07 324 aa13.22□□□□□ -0.29
RPAIN-206ENST00000539417 YAE1D1Q9NRH1 226 aa13.22□□□□□ -0.29
RPAIN-206ENST00000539417 INPP5EQ9NRR6 644 aa13.22□□□□□ -0.29
RPAIN-206ENST00000539417 GPR173Q9NS66 373 aa13.22□□□□□ -0.29
RPAIN-206ENST00000539417 UBAP1Q9NZ09 502 aa13.22□□□□□ -0.29
RPAIN-206ENST00000539417 DIMT1Q9UNQ2 313 aaKnown RBP13.22□□□□□ -0.29
RPAIN-206ENST00000539417 SIRT4Q9Y6E7 314 aaPredicted RBP13.22□□□□□ -0.29
RPAIN-206ENST00000539417 SETD2Q9BYW2 2564 aaPredicted RBP13.21□□□□□ -0.3
RPAIN-206ENST00000539417 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.21□□□□□ -0.3
RPAIN-206ENST00000539417 A6NLC8 198 aa13.21□□□□□ -0.3
RPAIN-206ENST00000539417 IGHV2-5P01817 119 aa13.21□□□□□ -0.3
RPAIN-206ENST00000539417 HTR1AP08908 422 aa13.21□□□□□ -0.3
RPAIN-206ENST00000539417 ATP6V1B1P15313 513 aa13.21□□□□□ -0.3
RPAIN-206ENST00000539417 C21orf33P30042 268 aaPredicted RBP13.21□□□□□ -0.3
RPAIN-206ENST00000539417 CDH15P55291 814 aa13.21□□□□□ -0.3
RPAIN-206ENST00000539417 SEC61A1P61619 476 aaKnown RBP13.21□□□□□ -0.3
RPAIN-206ENST00000539417 SLC3A1Q07837 685 aa13.21□□□□□ -0.3
RPAIN-206ENST00000539417 ST3GAL4Q11206 333 aa13.21□□□□□ -0.3
RPAIN-206ENST00000539417 ALKBH1Q13686 389 aaKnown RBP13.21□□□□□ -0.3
RPAIN-206ENST00000539417 TMEM42Q69YG0 159 aa13.21□□□□□ -0.3
RPAIN-206ENST00000539417 CYB5R2Q6BCY4 276 aa13.21□□□□□ -0.3
RPAIN-206ENST00000539417 AHSA2Q719I0 299 aa13.21□□□□□ -0.3
RPAIN-206ENST00000539417 DOK3Q7L591 496 aa13.21□□□□□ -0.3
RPAIN-206ENST00000539417 GCSAMQ8N6F7 178 aa13.21□□□□□ -0.3
RPAIN-206ENST00000539417 SPERTQ8NA61 448 aa13.21□□□□□ -0.3
RPAIN-206ENST00000539417 SEH1LQ96EE3 360 aa13.21□□□□□ -0.3
RPAIN-206ENST00000539417 TMEM80Q96HE8 168 aa13.21□□□□□ -0.3
RPAIN-206ENST00000539417 RNF170Q96K19 258 aa13.21□□□□□ -0.3
RPAIN-206ENST00000539417 GAL3ST1Q99999 423 aa13.21□□□□□ -0.3
RPAIN-206ENST00000539417 PLCXD1Q9NUJ7 323 aa13.21□□□□□ -0.3
RPAIN-206ENST00000539417 FKBP14Q9NWM8 211 aa13.21□□□□□ -0.3
RPAIN-206ENST00000539417 PAK1IP1Q9NWT1 392 aaPredicted RBP13.21□□□□□ -0.3
RPAIN-206ENST00000539417 NOP16Q9Y3C1 178 aaKnown RBP13.21□□□□□ -0.3
RPAIN-206ENST00000539417 A0A1B0GVI7 797 aa13.2□□□□□ -0.3
RPAIN-206ENST00000539417 CDIPTO14735 213 aa13.2□□□□□ -0.3
RPAIN-206ENST00000539417 SYT7O43581 403 aa13.2□□□□□ -0.3
RPAIN-206ENST00000539417 TGFAP01135 160 aa13.2□□□□□ -0.3
RPAIN-206ENST00000539417 MYF6P23409 242 aa13.2□□□□□ -0.3
RPAIN-206ENST00000539417 DCKP27707 260 aa13.2□□□□□ -0.3
RPAIN-206ENST00000539417 GZMKP49863 264 aa13.2□□□□□ -0.3
RPAIN-206ENST00000539417 GPM6AP51674 278 aa13.2□□□□□ -0.3
RPAIN-206ENST00000539417 C6orf141Q5SZD1 244 aa13.2□□□□□ -0.3
RPAIN-206ENST00000539417 SFRP4Q6FHJ7 346 aaPredicted RBP13.2□□□□□ -0.3
RPAIN-206ENST00000539417 ZNF485Q8NCK3 441 aa13.2□□□□□ -0.3
RPAIN-206ENST00000539417 DEFB108BQ8NET1 73 aa13.2□□□□□ -0.3
RPAIN-206ENST00000539417 HPS1Q92902 700 aa13.2□□□□□ -0.3
RPAIN-206ENST00000539417 MICU1Q9BPX6 476 aa13.2□□□□□ -0.3
RPAIN-206ENST00000539417 TLNRD1Q9H1K6 362 aa13.2□□□□□ -0.3
RPAIN-206ENST00000539417 FN3KRPQ9HA64 309 aa13.2□□□□□ -0.3
RPAIN-206ENST00000539417 C14orf119Q9NWQ9 140 aa13.2□□□□□ -0.3
RPAIN-206ENST00000539417 RNF7Q9UBF6 113 aa13.2□□□□□ -0.3
RPAIN-206ENST00000539417 ENPP5Q9UJA9 477 aa13.2□□□□□ -0.3
RPAIN-206ENST00000539417 CUBNO60494 3623 aa13.2□□□□□ -0.3
RPAIN-206ENST00000539417 ANXA2P2A6NMY6 339 aa13.19□□□□□ -0.3
RPAIN-206ENST00000539417 ZNF732B4DXR9 585 aa13.19□□□□□ -0.3
RPAIN-206ENST00000539417 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.19□□□□□ -0.3
RPAIN-206ENST00000539417 SLC1A7O00341 560 aa13.19□□□□□ -0.3
RPAIN-206ENST00000539417 MTRF1O75570 445 aaKnown RBP13.19□□□□□ -0.3
RPAIN-206ENST00000539417 NRASP01111 189 aa13.19□□□□□ -0.3
RPAIN-206ENST00000539417 PIPP12273 146 aaPredicted RBP13.19□□□□□ -0.3
RPAIN-206ENST00000539417 CCR9P51686 369 aa13.19□□□□□ -0.3
RPAIN-206ENST00000539417 UBE2V2Q15819 145 aa13.19□□□□□ -0.3
RPAIN-206ENST00000539417 CEACAM21Q3KPI0 293 aa13.19□□□□□ -0.3
RPAIN-206ENST00000539417 FAM76BQ5HYJ3 339 aa13.19□□□□□ -0.3
RPAIN-206ENST00000539417 PLCXD3Q63HM9 321 aa13.19□□□□□ -0.3
RPAIN-206ENST00000539417 LYPD2Q6UXB3 125 aa13.19□□□□□ -0.3
RPAIN-206ENST00000539417 WDR82Q6UXN9 313 aa13.19□□□□□ -0.3
RPAIN-206ENST00000539417 KCTD8Q6ZWB6 473 aa13.19□□□□□ -0.3
RPAIN-206ENST00000539417 PEG10Q86TG7 708 aaKnown RBP13.19□□□□□ -0.3
RPAIN-206ENST00000539417 SCCPDHQ8NBX0 429 aa13.19□□□□□ -0.3
RPAIN-206ENST00000539417 GATAD2BQ8WXI9 593 aa13.19□□□□□ -0.3
RPAIN-206ENST00000539417 ERGIC1Q969X5 290 aa13.19□□□□□ -0.3
RPAIN-206ENST00000539417 ADAT3Q96EY9 351 aaPredicted RBP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms